genome.fa.s15223.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015223.1 Kokia drynarioides strain JFW-HI SEQ_130267, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  583935

Tables:   1   2   

This is table  2  of  2  ( 207 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307507--307561	21	2.4	24	82	8	71	29	10	29	30	1.91
311050--311312	131	2.0	131	100	0	526	34	13	22	30	1.92
313720--313772	25	2.1	25	82	0	61	24	16	24	33	1.96
313716--313921	78	2.6	78	77	7	220	25	16	23	34	1.95
320666--320705	18	2.2	18	86	0	53	20	5	5	70	1.26
321520--321576	15	3.5	15	71	17	51	47	1	5	45	1.35
327150--327191	21	2.0	21	86	4	59	50	0	16	33	1.46
334217--334258	13	3.0	15	80	16	54	0	30	4	64	1.14
335172--335246	38	2.0	38	94	0	132	33	25	14	26	1.94
345910--345958	24	2.0	24	100	0	98	44	8	16	30	1.76
346181--346327	71	2.1	71	94	0	258	30	10	17	41	1.83
347293--347349	21	2.7	21	77	0	60	38	24	7	29	1.82
348081--348372	52	5.6	52	90	2	444	34	22	14	28	1.94
359650--359688	18	2.2	18	86	9	53	56	0	2	41	1.13
360098--360148	27	2.0	25	82	17	61	56	11	0	31	1.35
361508--361560	28	1.9	28	88	3	81	24	26	0	49	1.51
361507--361568	28	2.3	27	82	2	79	29	25	0	45	1.54
362517--362590	24	3.1	24	90	1	78	27	10	8	54	1.63
362537--362590	24	2.2	24	100	0	108	22	11	9	57	1.61
369170--369568	52	7.6	52	88	1	505	26	14	21	37	1.92
373621--373819	52	3.8	52	84	4	240	33	15	22	29	1.94
373621--373861	104	2.3	103	80	7	238	33	14	22	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
380240--380296	17	3.4	16	81	11	69	14	21	12	52	1.73
383680--383945	52	5.1	52	91	0	397	36	21	13	27	1.92
390750--390989	52	4.6	52	77	9	202	30	11	25	32	1.91
390749--390989	105	2.3	105	81	2	279	30	11	24	33	1.91
397998--398245	52	4.8	51	77	6	228	31	15	22	30	1.95
402541--402597	17	3.4	17	72	15	55	17	22	8	50	1.73
407059--407295	51	4.6	51	86	3	298	32	14	24	28	1.94
407059--407249	101	1.9	101	91	0	310	32	13	24	28	1.93
410262--410296	16	2.2	16	90	10	54	51	2	17	28	1.59
416101--416155	16	3.4	16	90	5	85	36	5	30	27	1.79
416327--416453	57	2.2	58	83	8	161	51	3	0	44	1.23
416445--416495	24	2.1	24	82	10	59	56	0	5	37	1.23
421445--421508	6	11.0	6	75	12	62	45	1	3	50	1.27
421438--421508	17	4.1	17	83	1	88	45	1	2	50	1.25
421438--421495	11	5.1	11	76	14	55	43	0	3	53	1.17
441677--441716	18	2.2	18	86	8	55	52	0	0	47	1.00
446552--446593	21	2.0	21	90	4	68	26	9	14	50	1.73
450523--451044	186	2.8	185	95	0	927	20	23	18	38	1.93
451168--451202	14	2.5	14	90	0	61	17	0	5	77	0.96
451173--451207	18	2.0	18	88	5	54	20	0	2	77	0.90
454076--454126	22	2.3	23	83	10	61	58	0	1	39	1.09
461111--461149	6	6.5	6	87	0	51	23	30	0	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
480991--481015	13	1.9	13	100	0	50	48	8	16	28	1.74
495478--495512	17	2.0	18	88	5	54	77	0	0	22	0.78
501250--501305	11	5.1	11	72	14	53	80	14	3	1	0.93
501253--501316	25	2.6	24	80	7	65	81	9	6	3	0.97
501264--501316	25	2.0	25	85	7	70	81	9	7	1	0.96
504246--504293	21	2.3	21	78	7	53	39	2	2	56	1.23
505414--505477	33	1.9	34	90	9	105	31	10	6	51	1.62
511461--511503	17	2.6	17	88	3	61	39	2	2	55	1.25
512240--512273	16	2.1	17	88	5	52	67	0	0	32	0.91
513256--513664	29	14.2	30	75	12	270	36	25	2	35	1.70
513256--513664	58	7.1	57	77	8	355	36	25	2	35	1.70
513256--513675	28	14.6	28	71	15	157	36	25	2	34	1.71
513797--513835	14	2.7	15	80	11	55	20	5	5	69	1.28
513967--514160	97	2.0	97	91	0	316	30	17	14	37	1.90
518011--518068	31	1.9	29	89	6	89	18	5	8	67	1.37
518277--518310	14	2.5	13	90	4	50	29	2	2	64	1.22
518904--518952	21	2.5	19	83	6	53	63	4	2	30	1.24
527822--527890	28	2.5	28	73	20	72	14	5	26	53	1.63
528083--528185	17	5.5	18	74	16	75	42	2	1	52	1.27
528075--528185	6	19.2	6	70	10	79	42	2	1	53	1.25
528097--528172	23	3.5	23	75	14	79	40	2	2	53	1.28
528075--528172	42	2.4	41	86	5	128	40	3	2	54	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528159--528200	17	2.5	17	84	7	50	54	2	2	40	1.26
528905--528976	3	23.3	3	80	8	74	59	2	1	36	1.20
530042--530343	29	10.2	29	73	12	231	35	25	3	34	1.75
530042--530459	59	6.9	59	79	11	382	35	25	4	34	1.76
530347--530456	30	3.7	30	78	7	116	34	25	3	36	1.74
530279--530411	68	2.0	68	85	5	180	39	24	3	33	1.73
530347--530479	59	2.3	59	82	2	160	33	22	4	39	1.74
541732--541791	27	2.2	27	93	3	102	18	18	8	55	1.67
542266--542864	206	2.9	206	88	2	875	37	21	20	20	1.94
548609--548679	29	2.4	31	85	4	92	49	14	12	23	1.77
548611--548679	31	2.3	29	85	5	84	49	14	13	23	1.78
548817--548889	37	2.0	37	81	5	85	31	5	5	57	1.44
548866--548934	20	3.4	20	68	29	56	30	4	1	63	1.22
557807--557843	17	2.1	18	85	14	51	59	0	0	40	0.97
575916--575982	29	2.3	28	77	7	71	34	14	1	49	1.53
578322--578359	2	19.0	2	100	0	76	50	0	50	0	1.00
578709--578737	14	2.0	15	93	6	51	0	10	0	89	0.48
578835--578885	21	2.3	22	83	12	61	33	3	11	50	1.57
580700--580754	25	2.2	25	83	0	65	67	9	1	21	1.28
581452--581485	2	17.5	2	93	6	61	52	0	47	0	1.00
581646--581698	22	2.4	22	77	0	61	62	11	9	16	1.54

Tables:   1   2

The End!