genome.fa.s15245.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015245.1 Kokia drynarioides strain JFW-HI SEQ_130290, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  767229

Tables:   1   2   3   

This is table  2  of  3  ( 253 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311102--311141	22	1.9	19	85	14	53	42	0	10	47	1.37
311236--311677	189	2.3	195	81	4	495	30	19	23	26	1.98
312249--312303	21	2.4	23	80	14	62	25	14	25	34	1.94
323518--323559	16	2.6	16	84	0	57	71	0	9	19	1.13
328832--328879	22	2.1	22	88	3	69	20	4	2	72	1.11
334146--334200	26	2.1	26	86	0	74	18	3	38	40	1.68
336759--336804	25	1.9	25	86	8	69	32	4	6	56	1.45
337898--337927	13	2.4	13	94	5	53	26	3	0	70	1.03
340066--340142	6	13.3	6	78	17	74	18	2	1	77	0.95
340066--340142	12	6.7	11	78	12	84	18	2	1	77	0.95
340066--340145	5	14.2	5	81	16	70	18	2	1	77	0.95
340106--340154	22	2.2	23	85	3	64	20	2	2	75	1.00
340560--340904	180	1.9	179	90	1	548	32	13	14	40	1.85
347524--347585	22	2.8	22	80	7	72	43	3	1	51	1.27
348044--348076	15	2.2	15	89	10	50	66	0	0	33	0.92
356386--356446	33	1.9	33	83	6	81	19	0	21	59	1.39
356456--356512	29	1.9	30	92	3	98	47	7	19	26	1.74
359420--359466	21	2.1	22	84	7	60	23	21	0	55	1.44
360289--360332	22	2.2	19	88	12	61	47	0	15	36	1.46
361704--361789	40	2.2	40	80	4	102	26	13	4	54	1.59
363366--363391	9	2.9	9	100	0	52	69	0	0	30	0.89
366684--366722	21	1.9	21	89	5	62	43	2	20	33	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370108--370141	17	2.1	16	89	10	52	64	5	0	29	1.17
372705--372738	17	2.0	17	88	0	50	0	35	0	64	0.94
379497--379611	55	2.1	55	93	0	194	30	31	18	20	1.96
379515--379644	55	2.4	55	81	2	136	30	27	20	21	1.98
381115--381177	31	2.0	31	100	0	126	25	20	12	41	1.88
382475--382507	17	1.9	17	93	0	57	57	15	12	15	1.65
383697--383780	38	2.2	38	82	4	98	23	17	25	33	1.97
385052--385248	19	10.4	19	81	2	225	21	24	19	34	1.96
391784--391997	19	11.3	19	84	1	241	19	26	21	32	1.97
391784--391997	57	3.8	57	82	0	268	19	26	21	32	1.97
401632--401673	22	1.9	22	100	0	84	19	4	9	66	1.38
406493--406858	121	3.0	121	98	0	714	28	24	20	26	1.99
408622--408679	29	2.0	29	100	0	116	37	17	17	27	1.92
413945--414002	30	1.9	30	93	6	100	34	17	8	39	1.80
414104--414270	82	2.0	82	91	0	271	29	27	6	35	1.82
416841--416873	17	1.9	17	88	11	50	27	0	6	66	1.15
416874--416936	31	2.0	32	84	9	85	23	12	15	47	1.80
417052--417159	51	2.1	50	82	1	126	34	17	13	34	1.90
419565--419634	36	1.9	36	82	0	86	34	8	27	30	1.87
420468--420492	12	2.1	12	100	0	50	16	32	36	16	1.90
424994--425046	21	2.5	21	90	0	88	35	20	18	24	1.95
436427--436459	7	4.7	7	100	0	66	12	0	42	45	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437912--438091	52	3.5	51	79	4	182	37	25	11	26	1.89
440931--440979	18	2.8	17	80	17	64	53	2	0	44	1.12
441505--441535	13	2.4	13	88	0	53	64	3	9	22	1.38
444217--444243	14	1.9	14	100	0	54	74	7	14	3	1.18
449504--449538	18	2.0	18	88	5	54	31	8	0	60	1.27
450248--450294	20	2.2	22	85	7	62	61	0	0	38	0.96
460446--460673	43	5.3	43	79	2	269	29	27	17	25	1.98
470830--471112	90	3.2	91	86	4	405	30	25	18	26	1.98
474592--474650	9	7.1	9	69	30	51	50	0	0	49	1.00
474584--474650	20	3.3	20	73	24	61	50	0	1	47	1.10
475532--475609	40	2.0	40	92	0	129	46	2	0	51	1.14
476347--476393	21	2.3	20	85	3	58	42	2	0	55	1.12
476494--476541	20	2.3	21	85	3	62	35	6	2	56	1.36
477690--477741	21	2.5	21	82	17	72	34	5	0	59	1.21
478404--478465	23	2.7	23	80	7	74	51	0	1	46	1.10
479479--479520	21	2.0	22	90	4	68	50	2	11	35	1.52
491763--491812	25	2.0	25	96	0	91	22	8	22	48	1.76
492178--492555	187	2.0	188	92	1	625	27	20	19	32	1.97
494617--494643	6	4.5	6	100	0	54	85	0	0	14	0.61
498892--498940	18	2.8	18	84	3	64	2	20	0	77	0.87
510846--510948	51	2.0	51	90	0	161	29	19	20	31	1.97
513147--513190	17	2.6	17	80	20	56	20	20	13	45	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
517121--517162	20	2.2	18	87	8	57	54	2	2	40	1.26
517070--517741	148	4.4	149	81	10	733	44	9	3	42	1.54
517063--517732	306	2.2	295	82	9	793	44	9	3	42	1.54
517351--517665	157	2.0	158	90	3	499	41	8	3	46	1.53
518151--518180	3	10.0	3	100	0	60	66	0	0	33	0.92
519543--519618	27	2.9	26	74	14	75	28	3	2	64	1.25
519769--519801	11	3.1	11	91	4	50	30	0	6	63	1.18
520596--520621	13	2.0	13	100	0	52	15	7	7	69	1.35
531610--532119	49	10.4	49	73	9	290	39	16	24	20	1.92
531609--532119	98	5.2	98	77	5	379	38	16	24	20	1.92
531643--532192	147	3.7	147	76	4	410	39	17	23	20	1.92
531643--532021	197	1.9	196	82	3	467	40	16	22	20	1.91
531643--532118	246	1.9	245	80	2	542	39	16	23	20	1.92
533815--533890	27	2.9	26	74	14	75	28	3	2	64	1.25
535197--535496	42	7.1	42	82	4	345	37	23	17	21	1.94
535184--535496	126	2.5	124	84	6	387	37	23	17	22	1.94
543831--543865	2	17.5	2	100	0	70	51	0	0	48	1.00
543886--543924	17	2.3	17	86	0	51	51	15	12	20	1.76
566858--566905	22	2.2	22	88	0	69	66	10	0	22	1.22
574876--574928	22	2.4	22	93	0	88	20	28	16	33	1.95
582645--582684	15	2.5	17	80	19	50	77	2	10	10	1.08
587601--587631	13	2.3	14	94	5	55	38	12	12	35	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591289--591387	50	2.0	50	100	0	198	38	3	14	44	1.60
591642--591688	15	3.1	15	84	0	58	21	48	2	27	1.61
596301--596344	18	2.4	19	81	11	56	52	0	0	47	1.00
596307--596353	14	3.0	16	81	15	62	48	0	0	51	1.00
599295--599335	21	1.9	22	85	5	57	58	0	7	34	1.26
599674--599730	23	2.7	20	80	19	71	8	26	3	61	1.42
599677--599721	23	2.0	23	95	0	81	11	28	4	55	1.54
602380--602453	35	2.1	35	92	0	121	37	12	13	36	1.82
605863--605903	14	2.9	14	88	0	64	21	19	21	36	1.95
616298--616349	21	2.5	21	93	0	86	23	11	26	38	1.89
624257--624289	17	1.9	17	93	0	57	75	0	12	12	1.04
629578--629628	21	2.5	20	83	3	57	17	25	1	54	1.53
631780--631827	18	2.9	17	78	9	55	77	0	16	6	0.97
637406--637895	24	20.3	24	76	2	363	22	27	13	37	1.91
659605--659654	24	2.1	24	96	0	91	28	24	20	28	1.99
663825--663866	22	1.9	22	90	0	66	28	16	9	45	1.79
664501--664547	21	2.2	21	84	0	67	40	10	19	29	1.85
667548--667758	99	2.1	99	81	5	237	35	19	20	24	1.96
667734--667978	100	2.4	100	77	6	253	34	17	19	28	1.95
668438--668480	14	3.1	14	86	6	52	67	4	0	27	1.10
672903--672944	22	1.9	22	90	0	66	28	16	9	45	1.79
673579--673625	21	2.2	21	84	0	67	40	10	19	29	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
676626--676836	99	2.1	99	81	5	237	35	19	20	24	1.96
676812--677056	100	2.4	100	77	6	253	34	17	19	28	1.95
677516--677558	14	3.1	14	86	6	52	67	4	0	27	1.10
681658--681711	21	2.6	21	76	5	56	24	11	27	37	1.89
688698--688751	21	2.6	21	76	5	65	25	11	27	35	1.90
690180--690282	52	2.0	52	96	0	188	35	16	22	25	1.94
692748--693113	37	9.9	37	83	1	430	17	20	29	32	1.96
693030--693092	21	3.2	20	67	28	55	14	23	31	30	1.94
695050--695131	26	3.2	26	66	22	64	29	7	23	40	1.81
695027--695261	52	4.5	51	81	4	283	27	11	22	38	1.88

Tables:   1   2   3