genome.fa.s15251.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015251.1 Kokia drynarioides strain JFW-HI SEQ_130296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  620055

Tables:   1   2   

This is table  1  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3256--3313	31	2.0	31	83	16	79	43	8	10	37	1.70
3893--3933	12	3.7	12	81	18	52	53	4	0	41	1.22
3887--3951	21	3.2	20	80	10	80	60	4	0	35	1.18
3888--3953	19	3.4	19	83	8	80	57	4	0	37	1.19
3909--3964	19	3.1	18	75	14	53	55	1	0	42	1.10
3967--4018	17	2.8	18	82	11	61	67	7	1	23	1.27
7210--7268	20	2.9	21	80	14	61	44	1	13	40	1.54
9009--9062	21	2.6	21	82	5	65	29	12	24	33	1.92
9750--10158	214	1.9	214	98	0	800	31	17	22	28	1.96
10698--10748	25	2.0	26	88	7	79	25	9	25	39	1.86
11367--11409	18	2.3	18	77	18	52	41	13	0	44	1.44
13903--13973	19	3.7	19	80	14	83	63	4	0	32	1.14
13903--13973	20	3.7	19	85	12	92	63	4	0	32	1.14
13944--13991	25	2.0	24	83	4	60	56	2	0	41	1.11
39991--40025	17	2.1	17	100	0	70	22	37	0	40	1.55
41303--41347	18	2.5	18	85	7	56	26	2	4	66	1.22
41431--41507	32	2.3	33	76	10	77	59	1	1	37	1.14
52677--52703	14	1.9	14	100	0	54	25	0	0	74	0.83
57131--57307	96	1.8	97	81	3	223	40	12	16	30	1.86
57542--57608	28	2.3	29	73	14	66	26	11	29	31	1.92
57685--57779	29	3.3	27	75	16	84	31	4	28	35	1.76
57685--57875	30	6.4	29	71	15	115	32	5	25	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57746--57841	31	3.1	31	76	8	106	28	4	25	42	1.73
59771--59879	6	18.7	6	71	12	84	47	1	2	47	1.27
59797--59874	11	6.7	11	74	11	66	52	1	2	43	1.23
59773--59858	17	4.9	17	73	10	75	50	2	2	45	1.27
61418--61444	14	1.9	14	100	0	54	37	14	7	40	1.74
67116--67191	38	2.0	38	100	0	152	26	15	13	44	1.83
69110--69136	4	6.8	4	100	0	54	25	0	22	51	1.48
81287--81322	19	1.9	18	88	5	54	33	2	0	63	1.08
82399--82423	9	2.8	9	100	0	50	92	0	0	8	0.40
85303--85368	30	2.3	28	84	10	80	33	7	4	54	1.49
86029--86072	14	2.8	16	80	16	56	52	0	0	47	1.00
87257--87366	54	2.0	54	100	0	220	24	20	12	42	1.86
89098--89137	21	1.9	21	84	0	53	52	2	2	42	1.28
95832--95931	50	2.0	49	86	7	139	50	20	13	17	1.78
114679--114762	38	2.2	38	87	2	116	33	34	5	26	1.81
116393--116419	2	13.5	2	100	0	54	48	0	0	51	1.00
126955--127167	91	2.3	91	85	7	272	35	16	11	36	1.85
127569--127614	23	2.1	23	84	8	60	28	2	4	65	1.23
129967--130007	21	2.0	20	90	5	55	34	7	7	51	1.58
133915--134551	321	2.0	321	91	0	1040	37	14	25	23	1.92
137818--137870	27	2.0	27	84	0	70	30	13	15	41	1.85
142281--142316	2	18.5	2	94	5	65	52	0	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144077--144112	17	2.1	17	94	0	63	47	16	5	30	1.70
149742--149818	23	3.7	20	68	11	55	70	14	5	10	1.32
149785--149868	22	3.9	22	73	10	75	71	16	4	7	1.26
149742--149831	32	2.8	32	72	5	83	71	15	4	8	1.28
149785--149874	20	4.3	20	73	20	60	72	16	4	6	1.23
149774--149865	32	2.9	31	73	10	78	70	15	4	9	1.29
151677--151731	27	2.0	27	89	0	83	29	23	25	21	1.99
155072--155111	19	2.1	20	90	9	66	55	0	15	30	1.41
155117--155163	18	2.5	18	77	19	51	61	0	4	34	1.15
155121--155180	28	2.1	28	84	6	77	63	1	6	28	1.29
155120--155194	29	2.5	28	79	10	78	64	1	5	29	1.24
155250--155297	21	2.3	21	79	13	55	64	2	6	27	1.28
155252--155297	20	2.2	22	78	21	55	65	2	6	26	1.28
176653--176686	17	2.0	17	94	0	59	41	2	11	44	1.56
177336--177378	23	1.9	23	86	13	63	32	0	2	65	1.06
178765--178830	17	3.9	17	77	0	69	37	0	6	56	1.24
179522--179579	21	2.6	23	75	8	57	50	5	6	37	1.52
179522--179579	12	5.1	12	75	12	50	50	5	6	37	1.52
180636--181013	29	13.0	28	79	9	312	34	30	2	32	1.72
180635--181015	59	6.5	58	79	6	360	34	30	2	32	1.73
180635--181015	88	4.4	86	75	11	294	34	30	2	32	1.73
181816--181858	18	2.2	20	88	8	63	30	0	4	65	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
186167--186204	18	2.1	18	90	0	58	28	10	10	50	1.70
186247--186293	23	2.0	23	84	8	60	34	19	10	36	1.86
189342--189377	17	2.1	18	94	5	65	75	0	2	22	0.94
191977--192045	27	2.6	26	81	4	75	23	0	27	49	1.50
206819--206871	27	2.0	27	85	7	72	28	9	9	52	1.64
211138--211172	17	2.0	18	88	5	54	45	2	0	51	1.16
214636--214790	52	3.0	52	87	3	215	37	23	12	26	1.91
217780--217808	3	9.7	3	100	0	58	68	0	31	0	0.89
219014--219079	26	2.5	27	80	11	75	63	1	3	31	1.19
238471--238509	20	2.0	20	94	0	69	35	0	12	51	1.40
245338--245388	22	2.3	22	83	10	59	49	3	7	39	1.51
245345--245388	22	1.9	24	86	9	65	45	4	9	40	1.56
246732--246778	16	2.9	16	84	6	60	44	4	4	46	1.42
253675--253701	5	5.4	5	100	0	54	37	0	0	62	0.95
260167--260422	125	2.0	125	94	1	449	33	28	17	20	1.95
263766--263815	26	1.9	26	84	8	66	58	10	0	32	1.31
263829--263862	16	2.1	16	88	0	50	50	0	11	38	1.39
264451--264491	20	2.1	20	86	4	57	46	0	2	51	1.14
275160--275234	4	18.0	4	83	8	96	29	0	1	69	0.97
276578--276688	54	2.1	54	98	0	213	47	8	11	32	1.69
279607--279646	20	2.0	21	90	5	64	32	2	5	60	1.32
284168--284321	76	2.0	76	100	0	308	29	19	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
286130--286155	3	8.7	3	100	0	52	34	30	34	0	1.58
299169--299227	31	1.9	31	85	0	82	28	3	8	59	1.43
300442--300514	30	2.4	31	81	6	87	41	0	4	54	1.19
305834--305872	15	2.4	16	87	8	53	35	0	0	64	0.94
309140--309203	6	10.8	6	75	8	51	39	3	1	56	1.25
309152--309202	17	3.1	16	80	8	57	37	3	1	56	1.29
310854--310919	30	2.2	30	91	0	105	33	25	3	37	1.72
310885--311047	29	5.6	29	76	13	138	36	26	2	34	1.70
318268--318358	28	3.4	28	63	25	79	37	29	8	24	1.85
318253--318354	51	2.0	51	98	0	195	36	27	8	27	1.86
322649--322723	24	3.1	24	88	0	105	57	6	10	25	1.57
324652--324726	24	3.1	24	88	0	105	56	5	12	26	1.57
325258--325298	16	2.5	17	76	11	50	36	0	0	63	0.95
328486--328604	59	2.0	59	100	0	238	36	15	11	36	1.84
334145--334188	13	3.5	13	81	3	54	52	0	4	43	1.22
334139--334188	26	2.0	26	84	4	66	54	0	4	42	1.19
345065--345170	53	2.0	52	85	1	140	52	25	13	8	1.68
350276--350307	10	3.1	10	95	4	55	12	12	0	75	1.06
361531--361556	2	13.0	2	100	0	52	50	0	0	50	1.00
364145--364186	3	14.0	3	100	0	84	0	33	0	66	0.92
368351--368411	29	2.2	27	85	11	79	52	8	8	31	1.60
369138--369167	4	7.8	4	92	7	53	76	0	23	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369139--369223	27	3.3	26	74	15	70	65	0	34	0	0.93
369631--369667	2	18.5	2	100	0	74	48	0	0	51	1.00
378438--378469	16	2.0	16	100	0	64	31	25	6	37	1.81
387702--387737	6	6.0	6	87	12	56	83	0	16	0	0.65
387702--387737	19	1.9	19	94	5	65	83	0	16	0	0.65
403058--403095	15	2.4	17	86	8	53	60	0	5	34	1.19
433093--433205	12	9.8	12	69	18	62	53	2	1	42	1.25
433130--433205	11	6.8	11	68	24	52	53	1	1	43	1.17
433095--433204	19	5.9	18	74	17	84	52	2	1	42	1.26
438795--438863	27	2.6	27	97	0	129	47	4	2	44	1.37

Tables:   1   2