Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015251.1 Kokia drynarioides strain JFW-HI SEQ_130296, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  620055

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
442227--442262
3
12.0
3
93
0
63
30
0
69
0
0.89
457832--457870
20
2.0
20
85
5
53
25
10
28
35
1.89
457957--458009
20
2.4
22
72
18
56
66
5
0
28
1.15
457946--458008
22
2.9
21
71
19
56
63
6
1
28
1.28
461060--461097
3
12.7
3
88
0
58
2
36
0
60
1.11
464354--464397
18
2.4
19
85
7
56
56
0
2
40
1.11
464684--464730
22
2.1
23
84
7
62
29
0
6
63
1.19
464674--464730
20
2.8
21
78
10
64
31
0
5
63
1.17
464674--464763
21
4.4
20
73
17
69
33
3
3
60
1.30
476068--476180
59
1.9
60
87
1
165
45
9
18
26
1.80
476045--476195
60
2.5
61
78
6
164
48
9
16
25
1.77
476094--476205
59
1.9
59
83
5
145
49
9
15
25
1.75
486650--486707
6
9.2
6
77
7
53
43
0
3
53
1.17
488239--488321
10
8.2
10
66
12
53
63
3
1
31
1.19
488239--488321
20
4.1
20
78
6
69
63
3
1
31
1.19
488818--488846
9
3.3
9
95
4
51
10
0
0
89
0.48
488818--488855
17
2.2
17
90
4
58
13
0
2
84
0.73
497950--498190
99
2.6
93
81
10
301
35
5
7
51
1.54
498067--498102
18
2.0
18
94
0
63
44
0
2
52
1.15
498004--498225
99
2.2
99
84
1
293
32
7
10
49
1.65
503207--503255
24
2.0
25
88
4
73
40
0
2
57
1.10
503607--503652
23
2.0
23
86
0
65
58
26
0
15
1.37
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
507571--507595
3
8.3
3
100
0
50
0
64
0
36
0.94
509484--509516
13
2.8
12
86
13
50
69
0
21
9
1.15
519979--520180
101
2.0
102
87
4
293
50
20
8
20
1.74
541795--541826
16
2.0
16
100
0
64
37
0
25
37
1.56
541960--541999
21
2.0
21
85
5
55
25
12
10
52
1.70
542504--542555
19
2.7
20
75
6
61
19
21
5
53
1.65
542761--542808
20
2.5
20
89
3
71
22
8
0
68
1.16
542764--542831
20
3.3
19
78
15
64
20
8
0
70
1.13
542784--542831
22
2.2
22
88
7
71
18
6
0
75
1.01
546606--546650
20
2.2
19
84
11
54
20
13
2
64
1.38
547338--547375
20
1.9
20
94
0
67
26
23
5
44
1.74
548092--548130
16
2.4
17
78
4
53
53
5
5
35
1.45
561189--561271
21
4.3
20
71
20
70
26
3
15
54
1.58
561150--561273
55
2.3
55
91
2
196
27
5
14
52
1.64
565562--565609
13
3.5
13
78
15
60
39
12
4
43
1.62
565554--565609
29
1.9
29
100
0
112
39
12
3
44
1.60
568660--568699
2
20.0
2
100
0
80
50
0
0
50
1.00
569688--569743
23
2.4
24
79
8
62
37
3
0
58
1.15
572630--572660
12
2.5
12
94
5
53
58
3
0
38
1.15
572638--572702
6
10.5
6
76
15
53
66
1
3
29
1.16
575862--575948
26
3.2
26
64
17
68
56
11
11
20
1.65
575838--575948
56
2.0
56
100
0
222
53
10
12
23
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
585795--585859
30
2.2
30
88
0
103
32
9
9
49
1.66
588588--588672
21
4.1
21
83
6
102
49
12
27
10
1.74
591645--591690
24
1.9
24
86
0
65
56
21
10
10
1.64
597022--597059
3
12.7
3
94
0
67
31
0
2
65
1.06
607667--607699
15
2.1
16
88
5
50
72
6
0
21
1.05
620003--620037
2
17.5
2
100
0
70
48
0
0
51
1.00

Tables:   1   2

The End!