genome.fa.s15253.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015253.1 Kokia drynarioides strain JFW-HI SEQ_130298, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  611692

Tables:   1   2   

This is table  2  of  2  ( 216 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390740--390921	100	1.8	100	81	0	229	13	24	21	40	1.90
402478--402622	29	5.0	29	70	17	102	39	3	24	32	1.72
402480--402903	58	7.3	57	78	11	337	38	2	24	34	1.70
402592--402854	29	9.1	29	64	14	114	37	2	25	34	1.69
402559--402882	174	1.9	173	82	7	415	38	2	24	34	1.69
402869--403006	30	4.7	30	83	4	174	36	1	25	36	1.65
402480--402965	58	8.3	57	76	10	274	38	2	24	34	1.69
402869--403006	59	2.3	58	82	4	177	36	1	25	36	1.65
402480--402963	116	4.2	113	78	10	399	38	2	24	34	1.69
404006--404076	3	23.3	3	78	13	56	33	1	2	61	1.19
404002--404076	12	5.8	13	73	13	66	33	1	2	62	1.17
404663--404719	18	3.4	17	80	4	53	42	1	1	54	1.21
404682--404749	17	4.1	17	81	5	77	50	2	1	45	1.26
406266--406707	81	5.5	81	85	1	521	26	17	23	31	1.97
406266--406699	162	2.7	160	85	1	580	27	17	23	31	1.97
407486--407518	7	4.6	7	96	3	57	27	0	0	72	0.85
407486--407544	15	4.0	15	76	12	68	27	3	0	69	1.04
408878--408919	21	2.0	21	85	0	57	52	2	2	42	1.27
409153--409466	81	3.9	81	81	3	353	31	18	19	30	1.96
409154--409468	162	1.9	162	85	0	432	31	18	19	30	1.96
409471--409642	81	2.1	81	89	4	258	28	19	20	30	1.97
409284--409642	189	1.9	189	82	3	454	30	19	19	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
410164--410198	18	1.9	18	88	0	52	42	2	11	42	1.55
411424--411747	81	4.0	81	86	2	436	26	19	20	33	1.97
411424--411742	162	2.0	162	88	2	480	26	19	21	32	1.97
419269--419334	31	2.1	31	83	5	80	51	12	9	27	1.69
427054--427666	221	2.7	227	84	7	807	44	9	16	30	1.79
427261--427455	99	2.0	100	85	4	270	44	9	15	29	1.79
438885--438921	6	6.3	6	96	3	67	29	0	0	70	0.88
438880--438921	18	2.4	17	88	7	66	26	0	2	71	0.98
440599--440631	2	16.5	2	100	0	66	51	0	0	48	1.00
441483--441540	15	3.6	16	77	11	64	58	1	1	37	1.18
444702--444761	25	2.4	25	81	10	61	43	3	6	46	1.46
462539--462608	15	4.9	15	67	18	51	62	1	1	34	1.13
469258--469295	19	2.0	19	89	0	58	44	0	7	47	1.32
470206--470272	21	3.5	20	66	26	54	8	17	32	40	1.81
473428--473459	6	5.7	6	85	14	50	50	0	50	0	1.00
485177--485238	20	3.1	20	66	0	52	45	6	8	40	1.59
485329--485378	25	2.0	25	92	7	84	42	0	6	52	1.26
487041--487081	3	13.3	3	89	5	64	65	0	0	34	0.93
497201--497249	25	2.0	26	88	8	75	46	8	10	34	1.67
515906--516077	92	1.8	93	90	4	276	27	18	14	39	1.90
518788--518850	30	2.0	30	84	6	81	60	9	3	26	1.43
519569--519607	4	9.8	4	94	0	69	28	0	23	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
520191--520242	6	8.7	6	97	0	86	50	28	0	21	1.49
521985--522063	30	2.6	31	71	11	74	45	1	12	40	1.50
527792--527831	21	2.0	21	85	5	55	42	17	7	32	1.77
528056--528082	14	1.9	14	100	0	54	70	7	0	22	1.12
528715--528752	3	12.7	3	94	0	67	34	0	36	28	1.58
531331--531422	43	2.1	43	83	0	121	30	13	15	41	1.85
533638--533689	26	2.0	26	100	0	104	53	11	7	26	1.63
534649--534736	44	2.0	44	100	0	176	31	9	25	34	1.87
540626--541019	153	2.6	152	85	5	535	36	18	21	24	1.95
547140--547346	102	2.0	102	99	0	405	16	15	26	41	1.88
550818--550907	17	5.6	16	73	22	73	37	1	7	53	1.37
550834--550893	6	10.2	6	76	8	61	40	0	3	56	1.16
550834--550893	11	5.1	12	78	10	61	40	0	3	56	1.16
552505--552724	30	7.5	29	68	14	78	38	26	3	31	1.74
552557--552723	29	5.7	30	77	13	154	38	28	1	31	1.67
552565--552929	87	4.2	87	84	4	414	35	26	4	33	1.75
552591--552990	29	13.8	29	71	14	231	34	26	4	34	1.76
552585--552929	175	2.0	176	85	2	471	35	25	4	34	1.76
552534--552933	59	6.9	59	72	10	200	35	26	4	33	1.77
557344--557407	11	5.7	11	74	9	58	81	0	14	4	0.85
557310--557407	45	2.2	43	80	18	105	78	0	14	6	0.92
557297--557399	10	9.9	10	69	15	57	78	0	12	7	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
557300--557391	21	4.4	21	68	6	53	79	0	10	8	0.92
558330--558680	50	7.1	50	75	5	228	36	16	29	18	1.92
558406--558644	98	2.4	99	78	2	266	35	15	29	18	1.93
558550--558663	51	2.3	49	85	5	149	36	18	28	15	1.92
558962--559086	37	3.3	37	74	4	133	25	38	14	21	1.91
558961--559230	78	3.5	78	79	6	309	24	32	18	24	1.97
559315--559946	209	3.0	208	84	3	788	36	18	22	22	1.95
560395--560438	18	2.4	18	88	0	61	36	0	4	59	1.18
560361--560458	46	2.1	46	85	7	128	34	1	8	56	1.36
562067--562139	29	2.5	29	81	2	74	43	15	1	39	1.55
562098--562185	29	3.1	28	78	4	70	37	25	2	35	1.68
562185--562455	29	9.3	29	72	17	136	34	23	5	36	1.78
562321--562624	58	5.2	58	76	7	251	31	26	9	32	1.88
562185--562603	88	4.8	88	78	6	381	31	25	7	34	1.85
562231--562539	29	10.6	29	70	13	145	33	25	7	33	1.84
562215--562619	29	13.9	29	69	9	83	31	25	8	33	1.86
562350--562624	29	9.5	29	69	11	154	30	26	10	33	1.89
567875--567924	24	2.1	23	85	3	64	50	0	0	50	1.00
569223--569360	55	2.5	53	80	5	143	41	15	15	28	1.87
578397--578434	17	2.2	17	90	0	58	23	21	0	55	1.44
583222--583261	17	2.3	17	86	4	53	22	27	2	47	1.64
584331--584408	34	2.3	34	100	0	156	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589529--589564	18	1.9	19	88	5	56	44	0	16	38	1.48
592035--592083	25	2.0	25	100	0	98	20	12	12	55	1.68
596013--596053	18	2.3	18	100	0	82	46	7	26	19	1.76
598321--598382	28	2.2	29	94	2	108	51	4	12	30	1.61
605078--605119	21	2.1	21	82	8	52	47	0	2	50	1.14
605190--605246	26	2.3	25	85	8	80	38	0	0	61	0.96
607561--607601	21	2.0	21	95	0	73	60	17	12	9	1.57
611602--611634	16	2.1	16	88	5	50	33	0	0	66	0.92

Tables:   1   2

The End!