genome.fa.s15255.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015255.1 Kokia drynarioides strain JFW-HI SEQ_130300, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  749686

Tables:   1   2   

This is table  2  of  2  ( 226 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302310--302540	116	2.0	116	89	3	358	21	22	9	45	1.80
315976--316005	2	14.5	2	93	6	51	50	3	0	46	1.18
316796--316934	51	2.7	51	82	4	156	44	6	13	35	1.70
325828--325993	82	2.0	82	97	0	314	26	18	29	25	1.98
326692--326772	30	2.7	30	96	0	144	16	17	1	65	1.34
340696--340739	24	1.9	22	90	9	70	40	4	0	54	1.21
340708--340744	16	2.3	16	90	0	56	37	2	0	59	1.12
341018--341066	22	2.1	25	81	11	59	53	0	2	44	1.12
346206--346245	20	2.0	19	85	9	53	52	2	0	45	1.14
355583--355609	9	3.0	9	100	0	54	11	0	0	88	0.50
359729--359772	18	2.4	19	80	7	54	25	0	6	68	1.14
359757--359815	30	2.0	29	83	6	73	42	1	1	54	1.20
374775--375121	184	1.9	183	87	1	516	38	19	15	26	1.91
377758--377798	20	2.0	20	85	9	55	31	2	14	51	1.56
381009--381055	14	3.4	14	73	5	51	21	12	29	36	1.91
384385--384415	6	5.2	6	92	0	53	3	12	48	35	1.58
385203--385227	13	1.9	13	100	0	50	64	16	0	20	1.30
388056--388143	29	2.9	29	84	5	95	31	10	15	42	1.81
388324--388390	31	2.3	28	80	14	82	38	11	10	38	1.77
389485--389614	64	2.0	64	100	0	260	41	11	12	34	1.79
395564--395590	2	13.5	2	100	0	54	51	0	0	48	1.00
399814--399838	7	3.6	7	100	0	50	0	12	0	88	0.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408822--408849	13	2.2	13	100	0	56	28	0	21	50	1.49
409139--409190	19	2.7	20	82	11	63	36	0	7	55	1.29
415326--415350	9	2.8	9	100	0	50	20	8	12	60	1.57
422619--422651	10	3.3	10	95	0	57	0	45	6	48	1.27
427264--427338	36	2.1	36	100	0	150	42	2	26	28	1.69
431154--431203	25	2.0	25	100	0	100	44	16	12	28	1.83
433327--433383	26	2.3	24	82	8	69	63	0	1	35	1.05
434456--434499	23	1.9	23	85	0	61	68	2	2	27	1.14
438943--439037	47	2.0	47	82	8	113	21	17	18	42	1.90
442640--442716	6	13.3	6	86	8	106	0	45	0	54	0.99
454725--454813	16	5.4	16	83	5	97	47	2	0	50	1.13
454735--454813	6	14.0	6	71	17	62	48	2	0	49	1.14
454725--454797	33	2.2	33	85	2	94	45	1	0	53	1.09
454836--454915	25	3.2	24	64	22	56	42	32	10	15	1.79
456534--456946	30	13.9	29	75	7	285	34	30	2	31	1.72
456529--456852	60	5.4	59	83	1	371	33	31	2	31	1.72
456750--456961	88	2.4	89	80	3	259	33	30	3	31	1.76
456750--457004	87	2.9	88	74	9	227	32	31	4	31	1.77
456955--457016	28	2.2	28	85	0	79	35	30	8	25	1.85
459038--459158	62	2.0	62	94	0	215	44	11	11	32	1.77
461318--461398	32	2.5	31	78	7	83	45	11	16	27	1.80
461263--461458	92	2.1	91	81	4	225	45	12	16	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462667--462695	2	14.5	2	100	0	58	48	0	0	51	1.00
462759--462811	18	2.7	19	80	11	54	43	0	3	52	1.19
462790--462942	71	2.2	71	80	7	159	45	7	8	38	1.64
470664--470937	139	2.0	139	87	2	399	37	17	22	22	1.94
479458--479513	29	1.9	29	85	7	78	35	10	7	46	1.66
480962--481019	16	3.6	16	79	4	64	48	22	5	24	1.71
486380--486602	111	2.0	113	86	1	315	21	11	23	43	1.85
488287--488323	2	18.5	2	94	0	65	45	0	2	51	1.15
490555--490609	25	2.2	25	87	6	76	41	5	3	49	1.43
491871--491920	26	1.9	26	100	0	100	12	20	12	56	1.67
491606--492140	161	3.3	162	83	4	611	22	17	12	46	1.82
498265--498292	2	14.0	2	100	0	56	50	0	0	50	1.00
499197--499227	2	15.5	2	100	0	62	48	0	0	51	1.00
515683--515874	96	2.0	96	80	8	212	36	13	19	29	1.90
516138--516366	29	7.8	29	83	4	273	32	3	29	34	1.76
516138--516366	59	3.9	57	85	7	266	32	3	29	34	1.76
516899--516923	13	1.9	13	100	0	50	52	32	0	16	1.44
518138--518182	24	1.9	23	90	4	72	51	0	0	48	1.00
518153--518235	17	4.9	17	79	5	87	49	4	2	43	1.37
518154--518235	34	2.4	34	83	0	101	50	4	2	42	1.37
518370--518414	20	2.3	19	84	3	54	62	2	2	33	1.20
528254--528302	19	2.6	19	84	12	57	53	6	0	40	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529174--529208	19	1.9	17	88	11	52	22	0	11	65	1.24
529174--529214	18	2.2	19	83	12	50	24	2	9	63	1.37
531870--531914	22	2.0	22	95	0	81	20	15	33	31	1.93
544829--544891	31	2.0	31	84	6	83	25	9	9	55	1.62
545190--545353	90	1.8	89	84	7	224	29	11	10	48	1.74
553355--553399	22	2.0	22	83	8	56	31	2	0	66	1.04
556823--556905	30	2.7	30	81	5	78	38	12	16	32	1.86
571291--571433	23	6.4	23	79	13	165	12	21	22	43	1.86
571291--571468	48	3.9	46	76	15	156	12	22	21	43	1.86
571394--571483	23	3.9	23	75	17	87	11	24	18	45	1.82
571307--571468	87	1.9	87	85	2	227	12	22	20	43	1.86
585504--585571	32	2.2	31	97	2	127	26	14	16	42	1.86
587262--587643	189	2.0	189	100	0	764	32	11	12	43	1.78
588002--588175	89	1.9	90	84	3	235	29	16	20	32	1.95
590832--590867	18	2.0	18	94	0	63	38	8	5	47	1.57
596122--596254	70	1.9	67	83	4	167	34	11	11	42	1.76
600691--600736	21	2.1	21	84	8	56	39	8	4	47	1.54
600747--600777	5	6.2	5	100	0	62	38	19	19	22	1.93
601615--601640	2	13.0	2	100	0	52	50	50	0	0	1.00
607443--607495	13	4.0	13	78	4	52	43	0	3	52	1.19
615100--615176	39	2.0	40	89	2	120	29	19	15	35	1.93
615098--615189	39	2.5	37	77	11	107	29	19	15	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
620047--620122	39	1.9	40	89	2	118	30	21	13	35	1.91
622415--622439	12	2.1	12	100	0	50	24	0	44	32	1.54
622970--623156	60	3.1	60	84	5	254	34	35	3	26	1.73
622970--623156	59	3.1	59	82	8	245	34	35	3	26	1.73
622973--623136	29	5.5	29	74	18	149	36	32	2	28	1.70
638251--638290	20	2.0	20	85	4	55	27	0	5	67	1.11
638328--638382	24	2.2	25	78	18	62	29	0	5	65	1.15
638341--638397	24	2.4	24	79	5	62	35	1	1	61	1.17
649391--649429	6	6.5	6	96	0	60	0	23	33	43	1.54
655789--655816	2	14.0	2	100	0	56	50	0	0	50	1.00
660451--660476	9	2.9	9	100	0	52	65	0	11	23	1.25
665257--665297	21	2.0	21	85	9	57	17	2	12	68	1.31
671583--671635	25	2.0	27	89	7	83	62	11	1	24	1.39
679969--680014	23	2.1	21	84	8	56	36	6	6	50	1.54
681636--681704	29	2.4	28	81	13	77	34	8	5	50	1.57
699019--699226	102	2.0	102	98	0	400	26	14	17	41	1.88
737635--737677	18	2.4	18	80	0	50	32	9	2	55	1.44
739465--739533	28	2.4	28	83	9	77	30	0	2	66	1.06

Tables:   1   2

The End!