genome.fa.s15257.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015257.1 Kokia drynarioides strain JFW-HI SEQ_130302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  576078

Tables:   1   2   

This is table  1  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428--467	20	2.0	20	90	0	62	27	5	35	32	1.79
623--687	3	21.7	3	96	0	121	33	1	0	64	1.03
1900--1976	37	2.1	37	85	4	102	54	7	2	35	1.43
6275--6471	30	6.6	29	73	11	139	31	3	24	40	1.72
6266--6410	61	2.4	61	80	5	170	33	3	22	40	1.71
6302--6496	59	3.2	60	78	9	166	33	3	22	40	1.70
6365--6496	30	4.4	30	74	9	117	34	2	23	40	1.67
6365--6516	59	2.6	58	73	9	135	36	1	22	39	1.66
8024--8334	123	2.5	123	84	5	396	23	18	16	41	1.90
8317--8384	34	2.0	34	97	0	127	11	19	17	51	1.75
8193--8508	158	2.0	158	86	2	447	20	19	17	42	1.89
8484--8578	48	2.0	48	87	0	136	22	18	16	42	1.89
8351--8735	124	3.1	122	88	4	551	21	20	17	39	1.92
13479--13586	30	3.6	30	71	7	92	35	9	22	33	1.86
13561--13747	59	3.1	59	81	7	166	38	3	19	38	1.70
13609--13767	30	5.3	30	75	6	135	38	3	20	37	1.69
13608--13749	59	2.4	58	85	3	185	39	2	20	37	1.67
16632--16672	21	2.0	21	90	0	64	43	17	9	29	1.80
26479--26516	17	2.2	17	90	0	58	15	10	10	63	1.52
41542--41570	2	14.5	2	100	0	58	48	0	0	51	1.00
45224--45430	102	2.0	102	95	1	371	41	7	24	26	1.82
45616--45658	18	2.3	19	88	4	61	60	0	4	34	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47108--47167	29	2.0	30	81	9	70	30	11	11	46	1.76
51206--51272	31	2.2	29	80	17	75	19	4	1	74	1.07
51277--51333	16	3.7	15	75	13	53	8	14	1	75	1.11
51280--51340	16	3.9	17	72	12	51	6	14	1	77	1.05
51280--51349	23	3.0	22	75	10	68	7	14	1	77	1.05
67094--67120	12	2.2	12	100	0	54	33	22	7	37	1.82
70921--70985	18	3.7	18	87	4	96	20	20	26	33	1.96
76225--76289	30	2.2	30	97	0	121	23	53	7	15	1.67
76240--76291	24	2.2	24	85	0	68	23	53	5	17	1.64
78869--78916	22	2.2	22	85	3	71	43	6	0	50	1.27
84409--84469	3	21.7	3	78	18	69	67	1	29	1	1.10
84410--84463	17	3.4	16	82	17	76	66	1	29	1	1.12
84409--84458	23	2.2	23	85	7	66	68	2	28	2	1.12
98673--98713	21	1.9	21	85	5	55	31	12	4	51	1.60
99544--99576	15	2.2	15	100	0	66	18	18	15	48	1.81
100866--100892	2	13.5	2	100	0	54	51	0	0	48	1.00
107604--107639	8	4.5	8	92	0	54	44	11	13	30	1.79
112072--112110	10	4.0	10	80	6	53	43	2	0	53	1.14
114783--114836	25	2.2	25	93	0	90	31	25	0	42	1.55
116211--116288	25	3.4	22	79	8	84	38	21	25	14	1.91
119487--119533	23	2.0	23	100	0	94	34	12	23	29	1.92
124227--124775	274	2.0	274	98	0	1071	37	16	18	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
129547--129647	36	2.8	36	92	3	159	16	22	19	40	1.91
129628--129706	40	2.0	40	89	0	122	26	25	18	29	1.98
131974--132107	69	1.9	69	84	0	178	47	13	3	35	1.61
131967--132114	23	6.4	23	76	0	152	45	14	4	34	1.66
138205--138260	21	2.7	21	80	5	60	28	12	23	35	1.91
147935--147974	20	2.0	20	85	0	53	62	20	5	12	1.48
147985--148048	11	5.6	11	73	14	58	53	25	9	12	1.68
147977--148074	23	4.3	22	85	5	106	55	24	8	12	1.64
147988--148059	12	6.2	12	74	6	67	54	23	9	12	1.67
147984--148072	46	1.9	46	88	0	133	52	24	8	13	1.69
148348--148395	24	2.0	25	83	4	62	62	2	2	33	1.18
149618--149693	33	2.3	34	84	6	93	23	5	7	63	1.42
149638--149711	30	2.3	32	81	6	89	28	5	8	58	1.49
149936--150095	58	2.7	58	83	9	182	50	10	14	25	1.74
162512--162556	22	2.0	22	100	0	90	42	35	8	13	1.75
164054--164116	27	2.3	27	83	5	74	31	4	15	47	1.67
176114--176150	18	2.1	18	89	0	56	24	27	0	48	1.51
183217--183253	18	2.1	18	89	0	56	24	27	0	48	1.51
188355--188443	24	3.7	24	83	1	106	21	19	26	32	1.97
195755--195791	18	2.1	18	89	0	56	43	2	18	35	1.65
197183--197259	36	2.1	36	87	0	109	38	24	10	25	1.87
198190--198287	40	2.5	40	89	0	142	37	19	27	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
199385--199469	43	2.0	43	81	4	100	30	11	10	47	1.74
200383--200457	28	2.7	28	89	4	107	48	21	5	25	1.71
201425--201526	51	2.0	51	98	0	195	26	27	14	31	1.95
203453--203490	20	1.9	20	88	0	58	57	0	2	39	1.12
203476--203529	27	2.0	29	82	10	69	61	5	1	31	1.30
204268--204308	15	2.5	17	80	11	59	65	0	0	34	0.93
205051--205084	17	2.0	17	94	0	59	38	17	20	23	1.93
207660--207693	12	2.8	12	90	0	50	0	17	8	73	1.08
214548--214593	17	2.9	16	78	9	51	52	4	10	32	1.56
217408--217447	21	1.9	21	94	0	71	17	10	5	67	1.37
248334--248375	12	3.8	12	84	12	54	26	0	4	69	1.08
251083--251140	27	2.1	27	78	15	66	63	3	1	31	1.21
251217--251266	23	2.1	23	85	7	64	48	2	2	48	1.24
256678--256715	16	2.3	17	81	9	51	78	2	2	15	0.97
259585--259609	5	5.0	5	100	0	50	40	0	0	60	0.97
260203--260239	9	3.9	10	86	10	51	35	0	2	62	1.10
260205--260267	26	2.4	26	82	12	67	33	0	1	65	1.03
267561--267602	21	2.0	20	86	9	57	73	9	0	16	1.08
283886--284100	110	2.0	109	82	6	265	40	9	13	36	1.78
296943--297057	18	5.8	19	75	11	99	61	0	6	31	1.26
297009--297066	23	2.6	23	88	2	82	63	0	6	29	1.20
297092--297142	19	2.7	20	90	6	79	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
297366--297415	20	2.5	20	77	3	57	36	4	4	56	1.37
297444--297494	21	2.4	21	80	0	57	41	1	3	52	1.31
297427--297481	10	5.4	10	74	18	51	38	1	3	56	1.28
297428--297532	20	5.2	21	73	18	73	43	2	1	51	1.27
297474--297551	20	4.2	19	74	12	63	41	3	0	55	1.18
297533--297580	21	2.2	23	82	14	57	25	4	4	66	1.27
297557--297598	17	2.5	17	84	7	59	28	2	4	64	1.26
298221--298282	31	2.1	31	90	6	101	40	3	8	48	1.49
298226--298290	29	2.2	31	83	5	80	40	6	10	43	1.65
302219--302243	3	8.3	3	100	0	50	32	36	0	32	1.58
312326--312350	5	5.0	5	100	0	50	0	60	0	40	0.97
314265--314310	24	1.9	24	86	8	67	32	4	6	56	1.45
315260--315296	19	2.0	18	94	5	65	37	2	0	59	1.12
316099--316137	16	2.5	15	84	12	51	61	2	0	35	1.10
317129--317447	29	10.8	29	78	8	297	35	26	2	34	1.72
317130--317447	59	5.4	59	81	8	292	35	27	2	34	1.72
317403--317568	59	2.8	58	76	8	185	31	27	7	33	1.84
317502--317564	29	2.1	29	80	11	65	30	28	4	36	1.78
319435--319487	21	2.5	21	100	0	106	28	32	20	18	1.97
322516--322541	3	8.7	3	100	0	52	34	0	34	30	1.58
327810--327847	20	1.9	20	100	0	76	47	15	5	31	1.68
328398--328473	23	3.3	23	83	7	84	10	26	22	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
328409--328541	23	5.9	22	78	11	108	12	23	26	38	1.89
328529--328595	26	2.6	26	100	0	134	10	23	20	44	1.82
328529--328603	26	3.0	24	90	7	82	13	22	20	44	1.86
329494--329525	15	2.1	15	94	0	55	37	53	0	9	1.34
346306--346844	96	5.6	96	88	0	666	20	18	20	39	1.92
346353--347008	192	3.5	190	85	3	863	20	18	20	40	1.92
346768--346923	81	1.9	81	85	2	215	18	18	22	40	1.91
346672--347076	177	2.3	177	92	0	677	20	18	21	40	1.92
347044--347180	69	2.0	69	86	2	195	19	21	18	40	1.92
347113--347315	96	2.1	96	85	0	262	22	21	16	39	1.92

Tables:   1   2