genome.fa.s15257.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015257.1 Kokia drynarioides strain JFW-HI SEQ_130302, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  576078

Tables:   1   2   

This is table  2  of  2  ( 187 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
358119--358154	3	12.0	3	93	0	63	63	0	2	33	1.08
358719--358782	34	2.0	33	87	9	96	62	9	7	20	1.50
377100--377143	20	2.3	19	84	7	54	47	6	2	43	1.42
377610--377651	18	2.3	18	88	8	59	45	0	0	54	0.99
380828--380879	24	2.1	26	82	13	65	63	1	0	34	1.06
381070--381107	20	1.9	20	88	0	58	26	21	10	42	1.85
381597--381642	25	1.9	23	86	8	65	36	2	4	56	1.31
383889--383936	22	2.2	22	88	0	69	14	16	4	64	1.43
398585--398613	2	14.5	2	100	0	58	0	51	0	48	1.00
403228--403367	69	2.0	68	86	8	194	13	22	20	44	1.86
403192--403320	23	5.5	23	83	5	134	10	21	22	44	1.83
403239--403364	23	5.5	21	76	17	85	13	23	19	43	1.86
407739--407775	3	12.3	3	100	0	74	32	0	0	67	0.91
412643--412685	21	2.0	21	90	4	68	62	0	2	34	1.08
412895--412927	5	6.8	5	86	6	50	36	0	0	63	0.95
413093--413133	17	2.4	18	80	15	52	53	0	0	46	1.00
416250--416538	103	2.8	104	85	2	393	31	24	14	29	1.95
416250--416539	52	5.6	52	85	3	370	31	24	14	30	1.94
421800--421828	13	2.1	14	93	6	51	72	6	0	20	1.07
425622--425656	2	17.5	2	93	0	61	0	48	0	51	1.00
432664--432689	11	2.4	11	100	0	52	42	0	0	57	0.98
440299--440421	61	2.0	61	88	0	183	13	34	10	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
443741--443792	18	2.8	18	77	16	52	30	1	1	65	1.14
448949--448976	11	2.5	11	100	0	56	28	0	7	64	1.20
449143--449175	14	2.3	15	85	15	52	33	0	0	66	0.92
454250--454307	30	1.9	30	92	0	98	55	3	10	31	1.50
461985--462067	31	2.7	31	77	15	100	51	9	0	38	1.35
462714--462755	12	3.1	14	80	13	52	80	0	14	4	0.86
462719--462755	6	5.8	6	87	12	56	81	0	13	5	0.86
466645--466674	2	15.0	2	92	0	51	46	0	0	53	1.00
467542--467577	18	2.0	18	94	0	63	41	27	8	22	1.82
473309--473346	13	2.9	13	81	11	51	39	2	0	57	1.12
473567--473658	18	4.4	20	72	18	73	36	3	1	58	1.21
473575--473628	21	2.8	20	83	8	58	29	3	0	66	1.09
473575--473633	18	3.1	19	85	9	75	30	3	0	66	1.08
480159--480214	17	3.2	18	73	14	55	62	0	0	37	0.95
482350--482393	22	2.0	22	86	8	63	40	0	0	59	0.98
482361--482416	25	2.2	24	79	14	60	33	1	0	64	1.04
484408--484438	2	15.5	2	100	0	62	48	0	51	0	1.00
486002--486056	24	2.3	23	78	12	58	32	5	1	60	1.30
509898--509971	36	2.1	36	97	0	139	18	10	35	35	1.86
511442--511467	6	4.3	6	100	0	52	30	0	0	69	0.89
513608--513658	23	2.3	23	79	3	59	45	29	7	17	1.77
514189--514226	14	2.6	15	83	8	51	63	5	5	26	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515829--515963	30	4.6	30	87	5	213	47	26	13	12	1.78
515858--516039	57	3.2	57	93	2	298	47	25	13	12	1.78
515888--516039	27	5.5	27	88	4	232	48	25	13	12	1.78
515820--516039	27	7.7	29	85	8	210	48	26	13	12	1.77
515967--516036	12	5.3	12	68	18	50	51	27	10	11	1.69
517835--517905	30	2.3	30	88	7	99	49	0	2	47	1.16
519101--519140	20	2.0	20	85	0	53	12	0	22	65	1.26
519128--519161	17	1.9	18	94	5	61	23	0	5	70	1.09
519128--519163	9	4.0	9	89	10	56	22	0	8	69	1.15
519177--519225	18	2.7	18	80	0	53	36	0	0	63	0.95
522352--522391	17	2.4	17	88	12	57	75	0	22	2	0.93
529475--529600	63	2.0	63	100	0	252	42	12	17	26	1.85
534239--534319	31	2.5	32	75	13	87	66	3	1	28	1.16
540266--540296	7	4.4	7	91	0	53	54	12	19	12	1.70
540578--540647	37	1.9	36	85	8	97	35	0	1	62	1.04
540635--540674	21	1.9	21	89	0	62	50	0	0	50	1.00
540846--540887	17	2.4	17	92	4	66	23	26	0	50	1.50
540826--540873	24	2.0	24	87	0	69	18	33	2	45	1.61
544725--544766	17	2.4	17	84	11	50	19	23	2	54	1.55
549718--549811	47	2.0	47	100	0	188	36	12	29	21	1.91
572375--572425	26	2.0	25	85	11	68	31	17	23	27	1.97
573333--573362	14	2.1	14	100	0	60	60	20	0	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
573344--573384	21	2.0	20	85	4	55	51	26	0	21	1.48

Tables:   1   2

The End!