genome.fa.s15260.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015260.1 Kokia drynarioides strain JFW-HI SEQ_130305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591355

Tables:   1   2   

This is table  1  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82--137	29	1.9	29	92	0	94	60	0	3	35	1.14
4252--4393	71	2.0	71	95	0	257	23	23	5	47	1.73
18624--18664	21	1.9	22	85	5	57	24	4	9	60	1.47
19086--19130	19	2.4	19	81	7	56	37	0	4	57	1.19
21486--21534	21	2.3	21	85	0	62	44	14	12	28	1.81
26827--26909	31	2.7	30	78	10	89	33	0	4	61	1.17
26910--26939	14	2.1	14	93	0	51	16	6	3	73	1.18
27989--28062	17	4.4	17	89	0	103	41	0	4	54	1.19
28772--28804	3	11.0	3	100	0	66	66	0	0	33	0.92
28803--28840	3	12.7	3	100	0	76	34	0	0	65	0.93
29838--30067	30	7.8	28	75	13	187	35	29	2	32	1.71
29838--30089	59	4.3	59	82	5	294	35	28	2	32	1.72
34488--34529	18	2.3	18	88	8	59	47	4	0	47	1.23
34503--34538	16	2.1	17	90	10	56	44	5	0	50	1.25
34500--34542	18	2.4	19	77	22	56	41	6	0	51	1.29
38018--38079	20	3.1	20	100	0	124	40	0	9	50	1.35
40587--40612	3	8.7	3	100	0	52	0	0	65	34	0.93
40837--41005	9	18.1	9	65	21	64	59	2	4	33	1.31
40889--40951	28	2.3	27	80	2	72	61	3	4	30	1.32
40966--41021	21	2.9	19	75	14	53	62	7	5	25	1.42
48367--48392	2	13.0	2	100	0	52	50	50	0	0	1.00
57712--57745	17	1.9	18	88	5	52	29	0	5	64	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61486--61510	11	2.3	11	100	0	50	68	8	8	16	1.38
62235--62263	14	2.1	14	100	0	58	48	13	6	31	1.69
67190--67250	23	2.7	23	77	10	61	9	27	16	45	1.79
69161--69194	13	2.6	13	85	0	50	58	11	0	29	1.33
70133--70179	18	2.4	18	82	10	58	6	10	4	78	1.06
71387--71418	15	2.1	15	94	0	55	50	15	6	28	1.68
73842--73889	24	2.0	24	91	0	78	18	16	16	47	1.82
74249--74294	19	2.5	19	86	13	69	67	2	0	30	1.03
77247--77298	2	26.0	2	100	0	104	50	0	0	50	1.00
83524--83552	10	2.9	10	100	0	58	51	10	27	10	1.68
86107--86187	31	2.6	31	84	3	92	51	12	6	29	1.63
93086--93126	18	2.3	18	86	0	55	34	12	26	26	1.92
102495--102563	30	2.3	31	82	12	90	42	0	5	52	1.25
102593--102664	3	24.0	3	72	20	53	36	0	2	61	1.11
102495--102681	42	4.4	42	73	15	111	40	1	5	52	1.34
102591--102677	29	3.0	29	77	11	97	36	1	4	57	1.27
103112--103145	16	2.2	16	89	5	52	20	14	11	52	1.73
110247--110341	29	3.4	27	76	16	97	58	9	4	27	1.48
110279--110325	25	1.9	24	86	4	67	68	10	0	21	1.20
110517--110614	46	2.1	46	100	0	196	29	17	12	40	1.86
110981--111011	8	3.8	8	95	4	53	61	3	0	35	1.12
111334--111411	31	2.5	31	82	2	93	44	11	10	33	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111663--111692	15	1.9	16	93	6	53	76	3	0	20	0.92
120984--121016	7	4.7	7	100	0	66	57	0	42	0	0.98
125086--125139	22	2.5	22	100	0	108	48	11	0	40	1.39
126203--126236	17	2.0	17	88	0	50	58	8	17	14	1.61
127050--127091	22	1.9	22	100	0	84	40	7	19	33	1.78
130458--130595	40	3.5	39	75	12	97	29	24	20	25	1.99
130493--130571	37	2.1	38	85	2	106	31	24	20	24	1.98
130679--130728	23	2.1	24	82	10	59	28	24	0	48	1.52
138029--138095	33	2.0	33	97	0	125	50	8	11	28	1.69
164660--164719	18	3.2	18	73	17	59	55	1	3	40	1.27
164883--164968	41	2.1	40	82	6	111	38	4	5	51	1.47
164896--164977	41	2.0	41	80	7	94	40	4	4	50	1.45
166100--166125	3	8.7	3	100	0	52	69	0	0	30	0.89
168471--168495	3	8.3	3	100	0	50	32	0	0	68	0.90
169168--169211	16	2.7	17	86	10	65	50	0	2	47	1.13
169168--169211	15	2.8	16	89	6	63	50	0	2	47	1.13
169192--169234	21	2.0	23	81	9	54	41	2	6	48	1.43
199462--199522	29	2.1	29	90	0	95	63	3	0	32	1.10
210365--210412	22	2.3	20	89	7	69	70	2	0	27	0.98
210374--210416	7	6.0	7	83	5	50	76	2	0	20	0.89
217551--217756	103	2.0	103	96	0	376	46	15	15	23	1.83
221072--221132	27	2.3	27	85	0	77	26	4	14	54	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
225919--226008	41	2.2	41	95	0	162	27	6	28	36	1.82
226612--226652	20	2.0	20	85	0	55	41	7	2	48	1.44
229700--229742	23	1.9	22	81	13	52	53	18	11	16	1.72
229928--229953	2	13.0	2	100	0	52	50	0	0	50	1.00
230207--230267	21	2.9	21	80	9	54	44	26	1	27	1.64
230237--230276	21	1.9	21	89	0	62	45	25	2	27	1.66
235124--235429	59	5.1	60	80	10	299	30	19	16	33	1.93
235144--235429	120	2.4	118	87	4	394	30	18	17	33	1.94
239306--240074	85	9.0	85	92	2	1222	42	3	5	48	1.44
239290--240074	171	4.6	171	92	2	1242	42	3	5	48	1.44
239306--240074	256	3.0	256	94	1	1321	42	3	5	48	1.44
239719--239768	20	2.5	20	76	0	55	48	0	0	52	1.00
240187--240392	111	1.8	112	83	5	274	36	13	18	31	1.90
243340--243668	166	2.0	166	96	1	606	35	16	22	25	1.94
248420--248454	11	3.1	11	95	4	61	60	2	37	0	1.12
251384--251449	29	2.2	30	83	5	80	36	18	16	28	1.93
251268--251449	92	2.0	92	83	0	229	40	15	13	31	1.85
251869--251903	3	11.7	3	93	0	61	62	0	2	34	1.10
258208--258239	2	16.0	2	100	0	64	50	0	0	50	1.00
261940--262267	120	2.7	120	77	9	285	36	21	20	21	1.95
262253--262537	120	2.3	122	82	7	330	34	16	22	25	1.95
262307--262588	123	2.3	120	82	7	354	34	17	24	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
262353--262639	123	2.3	123	78	7	303	35	17	22	24	1.95
262555--262734	93	1.9	93	83	4	229	33	23	19	23	1.97
262645--263144	123	4.1	123	77	5	429	36	19	20	24	1.95
276798--276847	21	2.3	21	83	10	57	56	4	2	38	1.30
281034--281114	41	2.0	42	92	2	137	41	7	12	38	1.71
287201--287273	30	2.4	30	78	17	78	49	1	1	47	1.18
294548--294585	18	2.0	20	85	10	53	28	5	5	60	1.40
306194--306237	18	2.6	16	83	16	61	72	2	2	22	1.07
306981--307174	97	2.0	98	85	3	266	38	13	16	31	1.87
306996--307203	97	2.1	97	78	5	215	40	12	16	30	1.85
307491--307678	29	6.5	29	71	12	154	42	1	23	32	1.64
307427--307681	58	4.4	57	84	6	300	41	3	24	30	1.70
307406--307681	28	9.6	29	69	16	162	40	3	24	30	1.73
309608--309738	6	22.8	6	70	14	89	54	3	0	40	1.24
309608--309738	17	7.6	17	85	5	174	54	3	0	40	1.24
309629--309690	23	2.7	23	82	12	74	58	3	0	38	1.15
310686--310738	11	5.2	10	86	6	63	62	9	18	9	1.52
310679--310738	21	2.9	21	75	20	63	60	10	20	10	1.57
310691--310731	11	3.8	11	93	3	66	60	9	17	12	1.57
312119--312171	23	2.3	23	84	15	67	50	0	3	45	1.19
312639--312691	20	2.7	20	87	0	70	28	16	11	43	1.83
321833--321884	18	3.0	18	81	10	56	46	1	0	51	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333286--333384	49	2.0	49	92	0	162	29	32	1	37	1.64
340158--340216	24	2.5	24	83	10	68	37	3	0	59	1.14
340180--340346	58	2.8	58	84	8	205	45	1	0	52	1.16
340258--340335	16	5.2	16	64	22	53	47	0	0	52	1.00
340326--340376	25	1.9	25	84	11	66	47	9	0	43	1.36
340507--340576	16	4.4	16	87	0	86	34	22	1	41	1.63
340507--340576	32	2.2	32	87	5	97	34	22	1	41	1.63
343642--343719	18	4.5	18	66	25	51	52	2	0	44	1.14
345046--345088	18	2.4	18	80	7	52	44	2	2	51	1.27
346605--346639	3	11.7	3	100	0	70	68	0	0	31	0.90

Tables:   1   2