Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015260.1 Kokia drynarioides strain JFW-HI SEQ_130305, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591355

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
347702--347757
7
8.3
7
78
7
53
39
25
17
17
1.92
347701--347754
27
2.0
27
92
0
90
38
24
20
16
1.92
347709--347757
13
3.7
13
78
5
62
38
24
18
18
1.93
354622--354678
25
2.3
25
100
0
114
14
7
33
45
1.71
368325--368349
3
8.3
3
100
0
50
32
0
0
68
0.90
369073--369217
30
4.9
31
80
8
151
37
2
17
42
1.62
369064--369217
61
2.6
59
79
7
159
37
2
18
41
1.64
387369--387418
25
2.0
25
96
0
91
16
30
16
38
1.90
388463--388497
11
3.3
11
88
8
54
11
0
0
88
0.51
388463--388497
10
3.3
10
92
8
52
11
0
0
88
0.51
389579--389617
12
3.1
13
82
17
55
41
0
5
53
1.23
390119--390217
17
5.7
18
83
9
125
40
1
3
55
1.22
390119--390228
35
3.2
34
84
7
125
43
0
2
52
1.21
390151--390211
6
10.5
6
76
13
65
44
1
1
52
1.20
390154--390209
11
4.9
11
82
10
60
39
1
1
57
1.20
390119--390228
52
2.1
52
87
0
157
43
0
2
52
1.21
390257--390333
25
3.1
25
71
15
70
44
25
10
19
1.83
390990--391036
9
5.2
9
75
10
51
53
0
2
44
1.12
390972--391023
15
3.5
15
77
15
54
48
0
3
48
1.20
390969--391101
27
4.7
27
72
19
85
51
2
3
42
1.32
400853--401561
205
3.5
205
90
0
1053
35
20
22
21
1.96
404609--404651
21
2.1
21
86
4
61
58
13
2
25
1.48
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
405033--405074
4
10.2
4
84
5
57
0
21
0
78
0.75
405036--405082
21
2.2
21
88
3
67
2
21
0
76
0.89
405033--405074
12
3.4
12
90
6
66
0
21
0
78
0.75
414552--414603
20
2.6
19
74
17
52
36
17
1
44
1.60
416322--416346
7
3.6
7
100
0
50
24
0
0
76
0.80
416552--416602
19
2.7
20
82
11
54
60
1
3
33
1.26
416688--416746
28
2.1
28
81
3
66
42
6
5
45
1.52
417812--417861
20
2.5
19
78
9
55
42
0
4
54
1.19
422127--422155
2
14.5
2
100
0
58
48
0
0
51
1.00
436754--436792
2
19.5
2
100
0
78
51
0
0
48
1.00
443390--443481
46
2.0
46
95
0
166
47
16
5
30
1.69
445797--445865
29
2.3
30
82
5
77
34
11
1
52
1.47
461770--461844
20
3.8
19
68
8
60
36
1
2
60
1.20
461775--461861
39
2.2
38
82
9
104
33
2
2
62
1.21
462431--462519
29
3.2
29
69
9
76
33
5
10
50
1.59
462435--462517
26
3.0
28
70
7
80
33
3
10
51
1.54
471838--472315
239
2.0
239
100
0
956
38
10
25
25
1.88
481147--481203
23
2.5
23
77
5
62
24
7
5
63
1.41
486239--486276
20
2.0
19
85
10
51
39
5
0
55
1.23
504159--504230
31
2.3
31
87
0
99
44
4
1
50
1.30
504400--504441
15
2.6
16
81
11
50
28
9
0
61
1.27
507985--508158
87
2.0
87
100
0
348
32
17
17
33
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
512342--512371
15
1.9
16
93
6
53
73
3
0
23
0.98
523289--523375
6
13.3
6
77
13
75
18
39
2
40
1.63
523278--523369
33
2.7
33
94
3
157
17
40
3
39
1.66
523307--523384
40
2.0
40
100
0
156
17
39
2
39
1.64
534794--534827
2
17.0
2
100
0
68
50
0
0
50
1.00
536178--536403
112
2.0
112
97
0
425
31
24
14
29
1.95
549789--549817
3
9.7
3
100
0
58
68
0
0
31
0.89
557995--558030
16
2.2
16
90
0
54
16
11
11
61
1.57
559553--559600
22
2.2
22
84
0
60
50
2
12
35
1.52
561869--561923
23
2.4
23
100
0
110
47
7
0
45
1.30
561869--561930
23
2.7
23
92
2
81
46
8
0
45
1.32
576633--576670
20
2.1
19
85
14
53
78
0
5
15
0.91
576921--576949
7
4.1
7
100
0
58
41
31
0
27
1.56
577660--577688
4
7.2
4
100
0
58
24
0
24
51
1.48
580454--580499
18
2.6
18
82
0
56
21
28
36
13
1.91
585373--585453
33
2.5
33
89
0
117
2
40
11
45
1.53

Tables:   1   2

The End!