genome.fa.s15273.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015273.1 Kokia drynarioides strain JFW-HI SEQ_130318, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  423685

Tables:   1   2   

This is table  2  of  2  ( 192 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
293800--293846	19	2.5	18	83	10	67	42	0	2	55	1.12
294571--294599	14	2.0	15	93	6	51	20	6	20	51	1.70
294610--294702	11	8.0	12	74	9	50	53	2	3	40	1.29
294633--294676	11	3.8	12	88	8	65	52	2	4	40	1.34
294625--294680	23	2.5	24	82	11	73	53	1	3	41	1.29
294650--294703	28	2.0	28	85	10	76	57	3	3	35	1.34
294661--294697	17	2.2	17	90	4	58	56	5	5	32	1.45
296146--296408	29	9.0	29	78	8	205	33	4	28	32	1.79
296146--296496	58	6.0	57	74	11	216	34	3	26	34	1.75
296154--296555	117	3.4	115	80	6	382	35	3	25	35	1.74
296358--296547	29	6.5	30	81	8	196	35	2	23	38	1.69
296331--296554	58	3.9	56	80	8	202	34	2	23	38	1.69
296382--296554	87	2.0	86	87	6	251	35	1	23	39	1.65
298369--298445	17	4.6	17	77	4	68	55	6	1	36	1.34
298375--298429	28	2.0	28	85	7	76	54	7	1	36	1.39
298369--298442	34	2.2	34	83	9	89	54	6	1	37	1.36
298822--299357	78	6.9	77	79	6	474	25	21	30	23	1.99
298824--299240	117	3.6	117	75	3	403	24	20	30	23	1.99
298822--299315	39	12.7	39	71	11	253	25	21	29	23	1.99
298822--299357	156	3.4	152	77	6	547	25	21	30	23	1.99
311685--311805	29	4.2	29	79	8	93	28	6	28	35	1.82
311685--311982	60	5.1	57	69	16	146	34	4	26	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311815--311892	28	2.7	29	88	2	113	39	1	25	33	1.64
311739--311959	117	1.9	118	83	2	293	36	4	25	33	1.75
311699--312040	29	11.6	28	75	9	164	35	4	26	33	1.76
311764--312040	60	4.7	61	75	9	225	37	3	24	34	1.73
311881--312040	30	5.3	29	77	8	133	38	3	21	35	1.72
311732--312045	90	3.5	86	74	11	251	36	4	24	33	1.76
311938--312056	60	2.0	60	83	6	152	39	5	20	34	1.77
313407--313452	24	1.9	24	81	0	56	36	8	15	39	1.78
313869--313911	17	2.5	17	81	7	52	51	4	2	41	1.35
314534--314598	25	2.7	24	83	4	85	56	18	6	18	1.61
314906--315032	15	8.5	15	75	6	105	26	22	20	30	1.98
314906--315020	30	3.8	30	80	4	124	26	20	20	31	1.98
320927--320973	21	2.2	21	77	7	51	29	23	17	29	1.97
325979--326013	8	4.5	8	96	3	63	80	0	0	20	0.72
334389--334428	10	3.8	10	81	12	53	45	30	0	25	1.54
334383--334427	22	2.0	22	100	0	90	44	31	0	24	1.54
336789--336832	21	2.0	21	86	4	61	38	18	13	29	1.89
343724--343780	18	3.2	18	80	12	64	66	3	0	29	1.08
349721--349771	19	2.7	19	85	8	61	52	7	0	39	1.30
354044--354091	24	2.0	24	84	8	62	41	16	6	35	1.74
358972--359198	53	4.3	53	86	1	292	29	13	18	37	1.90
358972--359198	107	2.1	107	87	2	323	29	13	18	37	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360703--360815	38	2.9	38	84	7	147	36	16	12	34	1.87
360690--360815	38	3.3	39	82	8	143	37	16	12	33	1.87
361054--361101	24	2.0	24	100	0	96	45	12	16	25	1.82
361816--362293	243	2.0	244	91	2	773	30	13	26	28	1.94
363631--363678	19	2.5	20	86	3	62	70	10	8	10	1.33
363631--363679	20	2.5	20	83	6	55	71	10	8	10	1.31
368663--368723	19	3.0	21	75	18	67	57	1	1	39	1.18
368663--368721	9	6.1	10	77	15	52	59	1	1	37	1.18
371461--371885	132	3.3	130	82	8	478	30	19	17	32	1.95
386531--386581	23	2.2	24	86	10	70	54	0	1	43	1.11
391661--391726	4	16.5	4	77	12	55	74	0	25	0	0.82
391665--391715	13	3.8	13	82	7	50	76	0	23	0	0.79
391704--391736	7	4.7	7	92	0	57	63	0	36	0	0.95
391692--391736	14	3.4	14	84	6	58	66	0	33	0	0.92
392078--392117	21	1.9	21	94	0	71	30	0	12	57	1.36
392444--392492	16	3.2	16	72	21	59	61	8	0	30	1.25
393771--393855	43	2.0	43	86	4	118	30	11	10	47	1.74
394501--394541	21	2.0	21	95	4	75	19	39	14	26	1.90
394772--394818	21	2.2	21	92	0	76	48	27	0	23	1.51
397286--397331	24	1.9	24	90	0	74	26	15	13	45	1.82
398152--398214	30	2.1	30	87	0	90	39	0	6	53	1.26
398121--398188	36	1.9	36	88	8	104	45	2	4	47	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407103--407227	61	2.0	61	98	0	241	43	16	7	33	1.75
407456--407507	23	2.2	24	83	10	63	61	7	5	25	1.45
408548--408594	24	2.0	24	91	0	76	53	0	6	40	1.27
408823--408849	8	3.4	8	100	0	54	88	0	11	0	0.50
415894--415925	2	16.0	2	93	0	55	46	0	0	53	1.00
416076--416103	10	2.8	10	100	0	56	89	0	0	10	0.49

Tables:   1   2

The End!