genome.fa.s15274.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015274.1 Kokia drynarioides strain JFW-HI SEQ_130319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  742443

Tables:   1   2   

This is table  1  of  2  ( 180 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258--287	11	2.7	11	94	0	51	66	0	0	33	0.92
2282--2309	4	7.0	4	100	0	56	25	0	25	50	1.50
3157--3228	32	2.2	32	87	2	99	36	12	13	37	1.83
4432--4483	21	2.5	21	100	0	104	50	7	19	23	1.73
5184--5219	2	18.0	2	100	0	72	0	0	50	50	1.00
9673--9722	22	2.2	23	85	3	66	56	8	0	36	1.29
16233--16300	4	16.5	4	83	11	75	67	0	30	1	0.99
16233--16300	13	5.5	12	79	10	75	67	0	30	1	0.99
18305--18389	43	2.0	43	86	4	118	30	11	10	47	1.74
18956--19092	45	3.0	45	88	0	202	31	27	21	19	1.97
19336--19416	28	2.9	28	83	1	83	51	22	3	22	1.63
22466--22531	4	16.2	4	72	9	53	1	34	0	63	1.04
22473--22532	21	2.9	21	92	2	95	1	36	0	61	1.06
32517--32554	3	13.3	3	83	10	53	0	28	0	71	0.87
32517--32554	11	3.4	11	82	17	51	0	28	0	71	0.87
32517--32554	14	2.7	14	88	8	51	0	28	0	71	0.87
34254--34299	20	2.3	20	81	7	58	67	0	0	32	0.91
43167--43245	33	2.5	31	78	14	81	46	10	15	27	1.77
44774--44837	17	3.8	17	71	8	58	42	0	4	53	1.22
46693--47042	29	12.0	29	74	15	251	34	32	2	30	1.72
46698--47048	59	6.0	58	89	4	499	34	32	2	30	1.71
47250--47434	96	1.9	96	81	8	225	28	20	15	35	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
54294--54332	15	2.6	15	100	0	78	23	33	0	43	1.54
58676--58931	120	2.1	120	95	0	458	35	21	19	22	1.96
59586--59663	6	13.5	6	72	17	67	47	1	1	50	1.17
59556--59630	11	6.7	11	73	14	55	42	0	4	53	1.19
59586--59668	17	4.8	17	72	12	71	49	1	1	48	1.16
59589--59645	11	4.9	12	81	12	66	42	1	1	54	1.21
60686--60729	22	2.0	23	86	8	65	22	15	25	36	1.94
61534--61924	58	6.7	59	91	2	585	31	29	5	32	1.80
61538--61940	30	13.8	29	71	19	277	32	29	5	33	1.80
78034--78078	2	23.5	2	91	8	76	48	0	51	0	1.00
78301--78346	13	3.3	15	78	9	53	30	0	4	65	1.12
79498--79549	2	26.0	2	100	0	104	50	0	0	50	1.00
80033--80084	26	2.0	27	81	11	63	63	7	7	21	1.46
84388--84416	2	14.5	2	100	0	58	51	0	0	48	1.00
85534--85609	39	1.9	39	84	5	100	36	0	3	59	1.16
93315--93343	7	4.3	7	95	4	51	0	10	0	89	0.48
96462--96492	16	1.9	16	100	0	62	51	29	0	19	1.47
102100--102148	9	5.2	9	77	18	55	53	0	0	46	1.00
102092--102177	20	4.5	19	73	13	79	48	0	2	48	1.14
102097--102177	29	2.9	28	77	13	87	48	0	1	50	1.08
102100--102175	36	2.1	38	90	5	120	50	0	1	48	1.09
103313--103353	2	20.0	2	90	5	64	46	2	2	48	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110943--111004	31	2.0	31	100	0	124	29	19	12	38	1.89
111898--111971	31	2.4	31	88	0	103	40	10	20	28	1.86
114047--114090	13	3.4	13	77	22	56	77	6	11	4	1.11
114047--114093	14	3.5	14	72	21	55	76	6	12	4	1.12
114111--114146	16	2.1	16	90	10	54	44	0	0	55	0.99
115954--116026	26	2.8	26	81	4	67	43	6	17	31	1.75
118160--118216	6	8.3	7	79	14	57	59	0	0	40	0.97
118148--118226	26	2.8	28	81	18	92	58	0	1	40	1.06
118369--118431	24	2.7	23	80	9	58	58	0	0	41	0.98
118527--118577	12	4.4	11	76	18	50	43	1	0	54	1.11
118646--118694	16	3.1	16	87	0	62	28	2	4	65	1.22
119146--119215	30	2.3	29	76	7	68	47	0	7	45	1.30
119533--119578	23	2.1	21	84	8	56	65	4	8	21	1.38
121240--121283	2	22.0	2	100	0	88	50	0	0	50	1.00
121403--121484	38	2.2	36	80	12	85	39	1	6	53	1.34
122655--123229	59	9.5	58	72	13	344	37	16	18	28	1.92
124987--125035	16	3.1	16	78	0	53	44	4	0	51	1.20
126895--126985	20	4.6	19	84	2	110	29	34	6	29	1.83
126895--126985	39	2.3	40	83	9	116	29	34	6	29	1.83
128937--129014	6	13.5	6	74	12	74	44	2	1	51	1.23
128957--129012	11	4.9	11	78	10	51	41	1	1	55	1.21
128905--129031	35	3.7	34	85	4	139	44	2	1	51	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
128905--129031	52	2.5	51	83	7	141	44	2	1	51	1.24
128905--129033	17	7.5	17	83	3	123	44	2	1	51	1.23
131221--131265	6	7.5	6	89	0	63	46	0	31	22	1.52
134448--134489	20	2.1	20	100	0	84	35	23	14	26	1.93
135048--135091	21	2.1	21	87	8	63	11	15	36	36	1.84
138218--138388	19	9.0	19	75	0	126	24	22	20	32	1.98
138219--138388	38	4.5	38	81	0	205	24	22	20	32	1.98
138219--138390	57	3.0	56	74	6	157	23	22	20	33	1.97
143999--144281	40	7.2	40	71	7	249	25	18	24	32	1.97
143963--144317	40	9.2	38	68	6	138	25	18	23	32	1.97
143963--144317	78	4.6	78	88	0	514	25	18	23	32	1.97
143963--144411	156	3.0	154	85	7	561	24	17	24	32	1.97
144257--144378	62	2.0	59	85	4	163	26	13	22	36	1.92
149016--149058	18	2.4	18	80	0	50	32	23	18	25	1.97
172220--172269	17	3.0	17	82	8	59	60	8	16	16	1.58
172690--172730	15	2.6	16	85	11	50	2	36	0	60	1.10
173838--173956	48	2.5	48	87	1	177	52	13	7	26	1.66
177051--177132	6	13.2	6	70	12	58	2	21	3	71	1.13
179944--180062	48	2.5	47	86	1	157	52	13	9	25	1.70
195389--195435	21	2.2	21	88	0	67	2	25	12	59	1.45
210955--210979	8	3.1	8	100	0	50	76	0	0	24	0.80
214209--214278	26	2.8	25	78	6	81	38	2	0	58	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218091--218161	36	2.0	36	88	0	106	36	22	12	28	1.91
227174--227208	18	1.9	18	94	0	61	22	31	5	40	1.78
248570--248611	12	3.1	14	83	13	52	66	0	30	2	1.04
257865--257914	18	2.7	19	77	17	52	58	0	36	6	1.23
257867--257914	15	3.3	15	81	16	57	58	0	35	6	1.23
258892--258938	24	2.0	24	83	8	60	76	0	23	0	0.78
278991--279468	239	2.0	239	99	0	947	30	12	21	35	1.90
285856--285909	17	3.1	17	75	15	56	55	12	7	24	1.63
286020--286063	21	2.1	21	83	8	54	2	25	11	61	1.41
300474--300773	43	7.0	43	86	2	370	26	17	28	27	1.98
309237--309665	24	17.9	24	84	0	482	25	25	16	32	1.96
312205--312256	26	2.0	26	100	0	104	23	30	11	34	1.90
322887--323055	25	6.8	25	91	0	230	22	15	25	36	1.93
322891--323075	25	7.4	25	90	0	226	22	15	24	36	1.93
348998--349077	26	3.1	26	62	16	67	22	13	18	45	1.85
348974--349077	51	2.0	51	100	0	208	21	13	17	48	1.81
349094--349170	17	4.5	17	81	1	73	20	22	11	45	1.83
356508--356572	30	2.2	31	83	5	80	44	0	6	49	1.27
356505--356575	29	2.4	30	77	11	74	43	0	5	50	1.25
369591--369651	16	3.4	18	70	17	54	47	0	24	27	1.52
370707--370831	50	2.5	50	85	0	178	32	12	12	43	1.80
370707--370857	50	3.0	48	74	9	135	29	11	12	45	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378133--378163	16	1.9	16	93	0	53	32	16	22	29	1.95
383668--383701	6	5.7	6	85	0	50	55	0	14	29	1.40
403424--403479	25	2.2	25	93	0	94	33	28	12	25	1.92
403434--403491	25	2.3	24	85	8	80	37	27	10	24	1.88
416386--416416	15	2.1	15	93	0	53	0	22	0	77	0.77
442988--443015	2	14.0	2	100	0	56	50	0	0	50	1.00
451298--451335	10	3.8	10	80	13	51	55	2	0	42	1.14
452088--452155	27	2.6	27	92	2	111	50	2	4	42	1.37
452115--452168	27	2.0	27	82	7	65	53	3	3	38	1.36
453427--453710	137	2.1	137	89	0	433	23	20	17	38	1.93

Tables:   1   2