Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015274.1 Kokia drynarioides strain JFW-HI SEQ_130319, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  742443

Tables:   1   2   

This is table  2  of  2  ( 180 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
454237--454378
71
2.0
71
98
0
275
38
21
14
26
1.91
460535--460583
19
2.4
22
83
12
61
51
20
10
18
1.75
464998--465121
66
1.9
65
84
1
167
43
14
20
20
1.87
466307--466334
13
2.2
13
100
0
56
25
28
21
25
1.99
468141--468179
17
2.3
16
83
12
51
25
0
10
64
1.25
471525--471573
24
2.0
25
96
4
91
20
8
0
71
1.11
473254--473550
26
11.5
26
82
0
326
25
21
16
36
1.94
478268--478321
22
2.5
22
90
0
81
35
12
11
40
1.79
496923--497796
93
9.4
93
73
12
594
35
16
20
27
1.94
496880--497872
186
5.3
186
84
1
1175
35
16
19
27
1.94
498171--498221
21
2.3
22
77
19
61
78
9
0
11
0.97
499871--499912
22
2.0
22
95
4
77
26
2
0
71
0.98
499887--499973
30
2.9
29
73
20
72
21
8
2
67
1.28
503636--503691
30
2.0
27
86
10
76
32
5
17
44
1.72
503966--504007
9
4.7
9
85
5
50
50
0
0
50
1.00
504820--504862
9
4.8
9
79
0
50
32
2
2
62
1.20
526057--526118
27
2.3
26
81
10
72
30
1
29
38
1.67
530986--531051
28
2.4
28
86
0
96
39
25
10
24
1.87
533977--534010
11
3.1
11
95
0
59
29
14
8
47
1.75
534195--534229
18
1.9
18
88
0
52
20
31
17
31
1.95
535007--535069
27
2.3
27
83
0
72
41
23
22
12
1.88
538920--539266
138
2.6
130
84
7
471
46
5
7
40
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
542477--542593
58
2.0
58
98
0
225
26
11
17
44
1.83
548856--548897
20
2.1
20
100
0
84
40
16
19
23
1.91
551680--551761
41
2.0
41
100
0
164
34
19
14
31
1.92
558969--558998
16
1.9
15
93
6
51
0
16
0
83
0.65
564572--564634
17
3.9
15
73
20
56
38
14
9
38
1.78
564571--564618
15
3.1
14
78
18
51
39
16
8
35
1.79
565463--565511
7
6.4
8
86
6
50
48
0
34
16
1.46
569868--569976
54
2.0
54
82
7
132
35
16
21
26
1.94
570141--570290
59
2.5
59
78
9
162
22
14
23
39
1.91
584421--584453
16
1.9
18
88
11
52
24
0
3
72
0.98
587263--587322
25
2.5
23
84
10
68
43
43
0
13
1.43
588861--588899
3
13.0
3
94
0
69
64
0
2
33
1.08
593566--593620
23
2.4
23
87
0
74
23
30
20
25
1.98
593635--593674
21
1.9
21
94
0
71
20
20
25
35
1.96
593611--593675
14
4.7
14
76
1
69
20
21
23
35
1.96
599009--599063
28
2.0
28
85
0
74
23
27
18
30
1.97
607914--607973
24
2.5
24
81
10
70
75
0
21
3
0.95
615186--615260
21
3.6
21
75
7
62
38
26
9
25
1.86
624096--624150
27
2.0
27
89
0
83
23
14
21
40
1.90
630370--630406
19
2.0
19
89
5
58
8
13
5
72
1.24
633550--633612
29
2.1
30
83
13
78
63
1
1
33
1.13
636297--636438
43
3.3
43
79
2
160
35
18
16
29
1.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
636849--636895
15
3.1
15
79
11
60
51
10
0
38
1.37
639940--639995
27
2.1
28
80
16
73
62
3
5
28
1.34
641526--641668
40
3.6
40
78
3
146
32
11
25
29
1.92
651124--651182
26
2.3
26
78
0
64
28
22
22
27
1.99
651325--651355
5
6.2
5
100
0
62
80
0
19
0
0.71
659403--659463
29
2.1
30
90
3
97
55
21
8
14
1.65
675461--675506
15
3.0
15
81
6
56
78
0
19
2
0.86
686620--686681
17
3.6
17
77
0
52
25
22
6
45
1.76
688555--688988
214
2.0
214
92
0
724
29
19
11
39
1.86
693802--693855
18
3.0
18
86
0
81
14
31
7
46
1.73
713609--713642
10
3.6
10
88
11
54
82
0
0
17
0.67
722930--723210
139
2.0
139
94
0
490
28
24
14
32
1.94
726008--726051
21
2.1
21
82
0
52
54
11
31
2
1.48
729059--729124
24
2.8
24
81
9
89
24
10
7
57
1.58
734746--734875
58
2.2
58
97
0
242
14
12
20
52
1.74
735509--735545
19
1.9
19
89
10
58
75
0
13
10
1.04

Tables:   1   2

The End!