genome.fa.s15276.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015276.1 Kokia drynarioides strain JFW-HI SEQ_130321, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  629240

Tables:   1   2   

This is table  2  of  2  ( 219 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
343482--343571	43	2.1	43	87	4	128	32	26	15	25	1.96
343651--343781	67	1.9	68	96	1	246	35	14	5	45	1.68
348108--348316	30	7.1	29	86	4	233	37	27	0	34	1.64
348121--348341	30	7.6	29	84	6	207	37	25	1	35	1.67
348606--348797	96	2.0	96	84	8	248	30	18	13	38	1.88
349910--349944	17	2.1	17	89	10	54	31	2	8	57	1.44
355991--356029	17	2.4	16	86	4	51	23	0	2	74	0.94
361032--361122	37	2.5	37	84	10	107	30	21	12	35	1.90
361573--361623	18	2.8	18	78	0	57	25	5	31	37	1.80
374389--374422	18	1.9	18	88	5	52	23	0	8	67	1.18
374874--374912	19	2.1	19	85	0	51	58	5	20	15	1.55
381770--381810	11	3.5	11	84	12	55	60	0	0	39	0.96
389185--389225	16	2.6	16	84	0	55	73	0	0	26	0.84
389917--389986	24	3.0	24	78	4	70	67	18	4	10	1.36
389915--389962	12	4.1	12	78	5	53	70	18	2	8	1.22
389936--390007	24	2.9	24	77	4	72	65	18	6	9	1.44
390000--390055	21	2.7	21	88	0	76	64	25	5	5	1.36
398673--398698	6	4.3	6	100	0	52	30	0	69	0	0.89
414941--415079	68	2.0	74	83	8	182	49	2	2	44	1.32
419698--419739	21	2.0	21	86	4	59	35	7	0	57	1.26
422286--422316	6	5.2	6	100	0	62	51	0	48	0	1.00
425346--425436	45	2.0	45	100	0	182	36	19	8	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436034--436087	22	2.4	21	79	11	54	38	1	1	57	1.20
436978--437063	33	2.9	29	81	10	77	43	5	1	50	1.34
436959--437041	33	2.5	33	90	2	130	38	4	2	54	1.35
437876--437923	20	2.3	21	85	3	62	20	10	4	64	1.41
441824--441972	74	2.0	74	97	0	280	37	16	14	31	1.89
442112--442148	16	2.3	16	100	0	74	29	13	21	35	1.92
444715--444803	20	4.4	20	77	2	81	51	6	14	26	1.67
444837--444884	19	2.5	20	83	13	64	56	6	16	20	1.62
444835--444999	20	8.4	19	71	15	70	56	9	16	16	1.65
444936--444982	20	2.3	20	92	0	76	57	14	14	12	1.66
444917--445005	20	4.5	21	78	9	73	58	11	15	14	1.63
444975--445059	21	4.2	20	71	17	68	65	4	11	17	1.41
444975--445059	20	4.2	20	73	16	77	65	4	11	17	1.41
444974--445070	19	4.8	20	72	20	78	63	5	13	17	1.46
444975--445101	60	2.1	60	82	5	150	63	7	11	17	1.49
445221--445403	20	9.3	19	70	21	94	54	7	15	21	1.66
445221--445403	40	4.6	40	74	14	141	54	7	15	21	1.66
445566--445592	9	3.0	9	100	0	54	0	11	0	88	0.50
451671--451700	15	1.9	16	93	6	53	56	6	0	36	1.26
460976--461002	2	13.5	2	100	0	54	51	0	0	48	1.00
468225--468274	25	2.0	25	84	11	66	48	0	2	50	1.12
472568--472597	2	15.0	2	100	0	60	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476587--476642	26	2.2	26	84	9	71	41	1	0	57	1.09
477449--477578	58	2.2	57	81	8	138	49	9	3	38	1.51
480595--480632	18	2.2	17	90	4	58	47	0	7	44	1.32
481263--481298	18	2.0	18	88	0	54	33	8	25	33	1.86
482304--482408	34	3.0	34	80	14	131	38	13	2	45	1.58
487799--487851	25	2.1	27	86	10	76	5	56	0	37	1.23
494335--494379	5	9.0	5	100	0	90	20	60	0	20	1.37
499506--499555	26	1.9	26	87	0	73	18	6	4	72	1.22
503065--503179	41	2.8	41	95	0	212	51	12	17	19	1.76
503909--503934	3	8.7	3	100	0	52	0	34	34	30	1.58
518451--518666	46	4.7	45	81	7	213	11	22	23	43	1.85
518451--518589	23	6.0	23	91	1	199	10	23	20	45	1.82
518523--518664	23	6.2	22	81	10	106	11	20	25	42	1.85
518452--518634	69	2.7	69	83	7	196	10	22	22	43	1.84
519340--519380	19	2.2	19	100	0	82	26	29	4	39	1.77
524354--524380	6	4.5	6	100	0	54	14	85	0	0	0.61
527013--527078	34	1.9	35	84	9	91	6	25	1	66	1.23
527971--528037	24	2.7	24	80	15	66	68	7	8	14	1.37
528879--528910	3	10.7	3	100	0	64	68	0	0	31	0.90
532485--532922	219	2.0	219	100	0	876	36	15	26	22	1.93
538043--538097	26	2.2	26	83	9	69	34	1	1	61	1.17
541395--541578	90	2.0	91	89	5	284	38	11	14	35	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546115--546152	2	19.0	2	100	0	76	50	0	0	50	1.00
548685--548821	20	7.3	20	76	15	159	10	14	13	61	1.57
548688--548821	35	3.7	35	77	13	153	11	14	12	61	1.57
548690--548786	15	5.8	15	75	17	77	11	13	13	61	1.56
548827--549075	25	9.6	25	72	16	139	59	12	17	11	1.62
548826--549075	30	8.3	29	70	16	145	58	12	17	11	1.62
548857--549089	20	11.4	20	68	21	81	59	12	15	12	1.62
548915--549025	35	3.2	35	83	7	127	54	12	19	12	1.69
548826--549055	5	46.0	5	72	13	100	58	12	17	11	1.62
549491--549814	106	3.0	107	90	4	492	41	16	7	35	1.76
550158--550528	116	3.4	106	83	9	478	41	16	7	35	1.76
550279--550528	107	2.3	107	91	2	396	42	15	7	34	1.74
554408--554532	27	4.3	27	71	16	106	4	15	20	60	1.50
554404--554519	15	7.7	15	69	14	87	2	15	20	61	1.46
554404--554534	32	4.3	32	79	12	141	3	16	19	60	1.51
554324--554519	5	38.4	5	66	18	75	6	15	17	60	1.55
554308--554534	15	14.7	15	65	22	80	7	16	17	58	1.60
575458--575527	35	2.0	35	88	0	104	27	15	22	34	1.95
575679--575726	11	4.4	11	75	0	51	8	6	16	68	1.35
576818--576842	2	12.5	2	100	0	50	52	0	0	48	1.00
585009--585047	6	6.5	6	87	0	51	46	0	30	23	1.53
588487--588515	5	5.8	5	100	0	58	20	79	0	0	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
589985--590129	72	2.0	72	100	0	290	37	19	11	31	1.86
593342--593385	22	2.0	22	86	4	63	61	4	0	34	1.16
594223--594275	27	2.0	25	82	7	61	71	1	3	22	1.12
599601--599644	2	22.0	2	95	0	79	52	0	47	0	1.00
602610--602643	13	2.6	13	85	0	50	58	11	0	29	1.33
611563--611607	23	2.0	23	87	8	67	48	2	0	48	1.13
611563--611601	21	1.9	21	89	5	62	46	2	0	51	1.14
624763--624812	21	2.4	21	80	6	57	70	0	0	30	0.88
625810--625864	28	2.0	27	85	7	74	40	7	0	52	1.29
626218--626249	2	16.0	2	100	0	64	50	0	0	50	1.00
628988--629039	17	3.2	17	78	15	65	50	0	0	50	1.00

Tables:   1   2

The End!