genome.fa.s15277.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015277.1 Kokia drynarioides strain JFW-HI SEQ_130322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  544247

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3174--3257	41	2.0	41	88	0	123	40	17	9	32	1.82
14195--14271	38	2.0	38	89	0	118	41	10	23	24	1.85
16774--16871	38	2.6	38	79	10	121	30	23	15	30	1.95
27331--27383	22	2.5	22	84	3	63	28	22	32	16	1.96
27369--27416	22	2.2	22	85	3	62	35	22	33	8	1.84
27369--27422	21	2.5	22	81	3	65	35	20	35	9	1.85
28529--28699	23	7.4	23	86	3	218	30	4	15	49	1.65
28691--28768	36	2.2	36	80	0	84	29	11	24	34	1.91
29156--29248	46	2.0	45	91	2	150	32	2	16	49	1.57
29162--29258	46	2.1	46	88	0	140	36	2	15	46	1.58
29168--29251	23	3.7	23	88	0	132	32	2	15	50	1.57
30047--30133	40	2.2	40	82	2	102	36	18	24	20	1.95
30115--30302	41	4.6	41	86	4	265	29	20	32	17	1.95
36070--36296	43	5.3	43	88	0	328	23	19	29	27	1.98
37027--37074	17	2.9	16	82	11	53	75	0	16	8	1.04
49238--49287	21	2.4	21	86	0	64	34	20	16	30	1.94
51045--51427	131	2.9	131	98	0	730	31	20	6	42	1.76
54748--55109	101	3.6	100	75	5	347	36	18	17	27	1.93
54800--55053	99	2.5	99	78	3	269	36	19	17	26	1.94
55151--55413	46	5.7	46	78	5	235	36	25	14	23	1.93
55147--55408	92	2.8	92	82	6	291	36	26	13	23	1.92
56573--56615	21	2.0	21	100	0	86	20	23	27	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61290--61370	36	2.2	36	77	0	90	32	8	22	37	1.84
61768--61900	23	5.8	23	92	0	203	34	4	12	48	1.60
61880--62032	58	2.6	58	83	6	193	33	7	19	39	1.79
62872--62931	28	2.0	30	84	9	79	36	1	13	48	1.52
62899--62949	24	2.1	24	82	7	59	41	1	11	45	1.52
66719--66798	27	3.0	27	73	8	76	26	15	23	35	1.94
70910--71000	28	3.2	28	82	0	110	21	20	23	34	1.97
71102--71191	27	3.3	27	86	9	130	21	14	24	40	1.90
74862--74895	17	1.9	18	94	5	61	70	0	20	8	1.13
75707--75786	27	3.0	27	85	1	108	41	8	21	28	1.83
75796--76033	28	8.5	28	78	0	235	44	9	20	25	1.81
75796--76033	84	2.8	84	82	1	264	44	9	20	25	1.81
78312--78345	17	1.9	18	94	5	61	70	0	20	8	1.13
81565--81812	28	8.9	28	76	2	221	43	8	21	25	1.82
81560--81812	56	4.5	56	80	3	287	43	8	21	26	1.81
81565--81812	111	2.2	112	83	5	324	43	8	21	25	1.82
81787--81833	15	3.3	15	74	17	55	42	4	21	31	1.72
81749--81853	27	3.7	28	81	7	97	45	5	20	27	1.74
84386--84459	23	3.3	22	76	12	69	27	27	18	27	1.98
85667--85693	6	4.5	6	100	0	54	33	0	0	66	0.92
85721--85818	49	2.0	49	87	0	142	32	12	28	26	1.92
89722--89806	23	3.7	23	79	3	82	24	20	22	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91656--91713	26	2.2	26	96	0	107	17	10	31	41	1.83
92020--92058	6	6.5	6	100	0	78	33	0	0	66	0.92
93363--93950	293	2.0	293	99	0	1158	37	5	23	32	1.78
94092--94178	25	3.4	25	76	9	84	28	16	27	27	1.97
97149--97209	28	2.2	28	79	2	70	55	4	19	19	1.61
102354--102409	28	1.9	30	85	7	80	33	0	3	62	1.12
102352--102433	28	3.0	27	77	13	71	32	0	3	63	1.12
103105--103167	25	2.5	25	86	0	90	61	3	1	33	1.21
104490--104526	2	18.5	2	100	0	74	48	0	0	51	1.00
106383--106479	51	1.9	51	82	4	124	40	15	21	22	1.91
106633--106793	33	4.9	33	77	4	137	46	15	18	19	1.84
106633--106793	66	2.4	66	82	4	182	46	15	18	19	1.84
109583--109721	67	2.1	67	86	2	190	30	17	23	28	1.97
117549--117686	68	2.0	68	88	0	204	49	6	18	26	1.71
122181--122214	12	2.7	13	86	9	52	0	14	2	82	0.79
126383--126449	33	2.0	33	91	0	107	35	20	19	23	1.95
128935--128980	18	2.6	18	100	0	92	21	23	32	21	1.98
133365--133417	25	2.1	25	100	0	106	37	18	7	35	1.80
136041--136197	40	4.0	40	80	4	149	32	22	18	26	1.97
144614--144655	13	3.2	13	83	9	50	80	0	19	0	0.70
144613--144655	21	2.1	20	91	4	68	81	0	18	0	0.69
161127--161179	3	17.7	3	77	14	56	67	0	32	0	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
167010--167108	48	2.1	48	98	0	189	25	27	21	26	1.99
185686--185733	24	2.0	25	87	4	71	47	10	14	27	1.76
198497--198544	23	2.1	22	84	3	60	37	4	0	58	1.18
202013--202100	46	1.9	46	85	0	122	29	7	20	42	1.80
202373--202412	21	1.9	21	100	0	80	42	12	10	35	1.76
208400--208475	40	1.9	40	94	0	134	32	27	5	34	1.79
210787--211084	53	5.6	54	86	5	396	29	15	20	34	1.94
210791--211084	104	2.8	105	85	3	403	28	15	20	35	1.94
210787--211084	157	1.9	159	86	6	435	29	15	20	34	1.94
217944--218130	53	3.5	53	88	0	275	27	13	22	36	1.91
223496--223527	14	2.3	14	94	0	55	0	15	0	84	0.63
226102--226202	51	2.0	50	98	0	184	40	15	16	25	1.89
234890--235077	52	3.6	52	83	4	236	26	13	23	36	1.92
245595--245639	12	3.3	14	84	12	58	66	0	31	2	1.04
254423--254616	52	3.7	52	91	0	307	25	12	24	37	1.91
256240--256289	21	2.4	21	90	6	75	44	18	10	28	1.81
256249--256292	21	2.1	21	100	0	88	43	20	9	27	1.82
262579--262653	32	2.4	32	80	6	91	30	22	21	25	1.99
262631--262695	15	4.3	14	73	21	51	30	24	23	21	1.99
271261--271287	4	6.8	4	100	0	54	77	0	22	0	0.76
304590--304671	40	2.0	40	95	0	146	28	13	26	31	1.94
323986--324069	40	2.1	40	100	0	168	35	13	25	26	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
329737--330105	126	3.0	123	90	3	580	43	8	10	37	1.69
340723--340766	21	2.1	21	91	0	70	0	29	13	56	1.38
341723--341810	43	2.0	43	100	0	176	31	20	20	27	1.97
343993--344159	84	2.0	84	95	0	298	30	26	19	23	1.98
346143--346178	2	18.5	2	88	5	56	50	0	2	47	1.15
350948--351106	60	2.7	59	84	6	205	50	8	10	30	1.67
356764--356906	62	2.3	63	81	2	180	53	16	9	20	1.70
367344--367380	18	2.1	18	100	0	74	27	5	35	32	1.79
369122--369160	18	2.2	18	90	9	62	48	15	10	25	1.76
369298--369373	34	2.2	34	93	4	127	31	17	0	51	1.45
370238--370313	23	3.2	23	62	20	57	18	25	28	27	1.98
370224--370319	48	2.0	48	100	0	192	18	20	33	27	1.96
371701--371754	3	18.0	3	96	0	90	62	0	37	0	0.95
378760--378794	18	1.9	18	94	0	61	54	14	5	25	1.62
382985--383015	3	10.3	3	100	0	62	35	0	64	0	0.94
391224--391264	15	3.1	14	83	16	52	58	0	0	41	0.98
391865--391901	8	4.6	8	93	0	56	70	0	0	29	0.88
406948--406996	21	2.4	20	77	12	55	69	2	2	26	1.10
406955--406995	21	1.9	22	85	5	57	68	2	2	26	1.15
407595--407650	18	3.1	17	80	10	67	71	3	0	25	1.02
407596--407653	26	2.3	25	82	11	73	68	3	0	27	1.05
423296--423335	19	2.1	19	100	0	80	27	10	27	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
428152--428184	15	2.1	17	88	11	52	66	6	0	27	1.15
430464--430492	13	2.2	13	100	0	58	0	6	0	93	0.36
430464--430497	12	2.8	12	90	4	50	0	11	0	88	0.52
430574--430603	2	14.5	2	93	6	51	46	3	0	50	1.18
432019--432047	13	2.2	13	100	0	58	0	6	0	93	0.36
432019--432052	12	2.8	12	90	4	50	0	11	0	88	0.52
432129--432158	2	14.5	2	93	6	51	46	3	0	50	1.18
432330--432385	13	4.5	12	76	14	60	51	1	0	46	1.11
435603--435651	24	2.3	20	73	26	55	36	14	16	32	1.89
435610--435665	24	2.3	24	100	0	112	35	12	17	33	1.88

Tables:   1   2