Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015277.1 Kokia drynarioides strain JFW-HI SEQ_130322, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  544247

Tables:   1   2   

This is table  2  of  2  ( 156 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
435803--435867
19
3.3
19
81
14
78
53
4
0
41
1.21
437818--437878
31
1.9
32
83
3
79
40
16
13
29
1.86
438909--438967
29
2.1
27
84
6
73
44
3
16
35
1.65
443049--443098
16
3.2
16
72
13
50
52
0
0
48
1.00
444184--444215
2
16.0
2
100
0
64
0
50
0
50
1.00
459159--459212
10
5.9
9
78
18
58
42
1
1
53
1.22
459161--459216
9
5.9
10
77
12
64
42
1
1
53
1.21
459150--459210
19
3.2
20
78
17
67
37
3
1
57
1.25
459158--459238
28
2.9
26
78
17
74
43
2
2
51
1.28
459193--459235
21
2.0
21
82
8
52
46
2
2
48
1.27
464648--464697
21
2.4
21
83
6
57
50
32
0
18
1.47
464919--464952
17
2.1
17
88
5
52
52
0
0
47
1.00
466345--466387
2
21.5
2
95
0
77
51
2
0
46
1.13
466345--466393
10
4.9
10
94
0
62
51
6
0
42
1.27
466395--466424
2
15.0
2
92
0
51
53
0
46
0
1.00
472812--473003
96
2.0
96
96
0
357
36
3
8
51
1.49
483230--483295
32
2.1
32
97
0
123
9
7
21
62
1.50
494506--494564
22
2.6
23
76
15
61
72
5
5
16
1.20
495321--495389
21
3.1
21
75
8
66
59
4
4
31
1.37
496023--496074
23
2.3
23
100
0
104
30
11
0
57
1.34
496666--496726
31
2.0
31
86
0
86
42
11
9
36
1.74
501468--501553
43
2.0
43
95
0
154
27
16
16
39
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
512096--512134
19
2.1
19
90
4
62
56
5
0
38
1.22
512413--512452
21
2.0
20
85
5
53
25
17
2
55
1.55
514210--514454
122
2.0
122
99
0
481
29
14
16
40
1.88
521984--522252
135
2.0
135
96
0
493
40
13
15
30
1.86
529766--529801
16
2.3
15
95
4
63
19
0
0
80
0.71
533084--533131
22
2.2
20
79
13
51
41
4
0
54
1.20
533240--533275
12
3.0
12
88
12
56
75
2
0
22
0.94
533242--533276
18
1.9
18
88
0
52
77
2
0
20
0.90
537689--537779
23
4.0
23
80
0
92
16
17
19
46
1.85
537736--537828
25
4.1
20
73
20
60
13
21
18
46
1.84
538476--538500
4
6.2
4
100
0
50
48
0
0
52
1.00
539787--539855
36
1.9
35
82
8
86
59
7
2
30
1.39
541552--541579
2
14.0
2
100
0
56
50
0
0
50
1.00
542508--542533
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1   2

The End!