genome.fa.s15286.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015286.1 Kokia drynarioides strain JFW-HI SEQ_130331, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  659172

Tables:   1   2   

This is table  2  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321559--321585	14	1.9	14	100	0	54	51	0	0	48	1.00
322282--322358	27	2.9	26	75	5	73	46	16	1	35	1.56
327310--327338	3	9.7	3	100	0	58	68	0	0	31	0.89
328122--328153	2	16.0	2	100	0	64	50	0	0	50	1.00
329481--329522	16	2.6	16	78	14	50	59	4	2	33	1.31
331154--331196	18	2.4	18	80	7	52	48	0	2	48	1.14
334706--334752	21	2.2	22	84	3	60	34	10	14	40	1.81
342914--342964	20	2.3	23	75	18	56	31	5	5	56	1.47
345308--345407	50	2.0	50	98	0	191	29	10	17	44	1.81
346427--346464	3	12.7	3	100	0	76	68	0	0	31	0.90
358902--358962	23	2.8	20	75	15	59	9	3	16	70	1.27
358910--358961	23	2.2	24	86	10	72	9	3	13	73	1.23
358940--359079	55	2.5	56	79	9	144	10	5	17	66	1.40
358934--359036	32	3.1	31	76	15	100	10	4	15	68	1.34
358990--359092	44	2.4	44	83	8	122	9	4	18	66	1.38
364506--364666	76	2.1	76	95	0	286	38	15	11	34	1.83
369690--369716	6	4.5	6	100	0	54	70	0	0	29	0.88
374200--374239	6	6.7	6	100	0	80	15	0	50	35	1.44
386874--386919	23	2.0	23	83	8	58	26	0	13	60	1.32
402597--402642	23	2.0	23	82	0	56	43	17	19	19	1.88
408540--408567	2	14.0	2	100	0	56	50	0	0	50	1.00
409008--409069	23	2.7	23	75	7	65	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409106--409140	2	17.5	2	100	0	70	48	0	0	51	1.00
410755--410818	31	2.1	31	85	5	85	34	15	9	40	1.80
411973--412009	3	12.3	3	94	0	65	37	32	0	29	1.58
416742--416802	25	2.4	27	81	13	83	45	4	4	44	1.46
421956--422056	47	2.1	48	76	5	107	35	21	4	37	1.75
430902--431005	51	2.0	52	92	1	174	26	11	13	48	1.77
448946--448972	14	1.9	14	100	0	54	59	0	0	40	0.98
452446--452484	19	2.1	19	85	0	51	51	0	2	46	1.14
463524--463562	11	3.5	11	82	0	51	66	7	5	20	1.36
470582--470610	7	4.1	7	100	0	58	58	0	0	41	0.98
482317--482370	6	9.2	6	76	11	58	18	1	16	62	1.41
482275--482370	41	2.3	41	85	3	122	19	2	18	59	1.48
484101--484130	13	2.3	13	94	0	51	10	16	0	73	1.09
489323--489368	19	2.3	21	81	7	60	23	2	6	67	1.25
490449--490511	23	2.8	22	76	11	56	55	1	3	39	1.25
490643--490679	16	2.4	16	90	4	58	54	0	2	43	1.14
493929--493969	18	2.2	20	86	8	59	7	7	0	85	0.75
494318--494363	22	2.0	23	87	4	67	39	2	4	54	1.32
494973--495017	19	2.4	19	81	7	56	37	0	4	57	1.19
495821--495850	16	1.9	16	93	6	53	16	13	0	70	1.18
495816--495876	22	2.8	22	87	7	72	14	11	1	72	1.20
495830--495876	21	2.2	22	92	3	78	14	8	2	74	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499432--499624	105	1.8	105	83	6	257	36	13	25	24	1.93
500189--500233	19	2.4	19	81	7	56	37	0	4	57	1.19
501031--501060	16	1.9	16	93	6	53	16	13	0	70	1.18
501026--501071	22	2.1	22	88	8	67	17	13	0	69	1.19
501040--501086	21	2.2	22	88	3	69	17	6	2	74	1.12
502942--502970	6	4.8	6	100	0	58	13	34	0	51	1.42
503246--503281	16	2.1	16	90	10	54	38	0	0	61	0.96
512518--512569	26	2.0	26	100	0	104	23	38	7	30	1.83
515154--515269	59	2.0	59	100	0	232	37	5	12	45	1.64
516812--516844	13	2.5	13	90	0	57	36	36	6	21	1.78
518559--518757	97	2.1	97	100	0	398	26	13	9	51	1.70
520421--520462	22	1.9	22	90	0	66	76	2	0	21	0.90
520421--520460	11	3.6	11	82	0	53	75	2	0	22	0.93
520651--521002	59	6.0	57	74	12	259	29	17	15	36	1.91
520643--520960	119	2.7	112	81	11	302	28	16	16	38	1.90
520701--521000	116	2.5	117	82	5	338	29	17	16	37	1.91
521188--521261	37	2.0	37	100	0	148	27	35	10	27	1.90
522016--522069	17	3.5	16	71	23	53	61	1	12	24	1.42
522009--522112	30	3.5	30	85	2	102	62	2	7	26	1.37
522022--522112	30	3.1	30	87	1	112	62	3	7	26	1.38
522262--522321	24	2.5	24	94	2	102	15	18	31	35	1.91
524763--525256	86	5.7	86	91	3	789	49	4	4	41	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
525357--525404	12	3.7	12	77	20	51	41	10	0	47	1.37
525367--525401	17	2.1	16	89	5	52	48	8	0	42	1.33
525357--525414	28	2.1	28	83	0	71	43	12	0	44	1.41
529232--529625	60	6.6	59	78	9	363	35	17	18	29	1.93
529191--529625	119	3.6	117	81	10	407	35	17	18	29	1.93
534738--534763	13	2.0	13	100	0	52	30	0	7	61	1.24
541183--541223	17	2.3	18	87	4	57	60	4	0	34	1.18
541302--541366	30	2.2	30	91	0	103	58	15	4	21	1.55
545504--545547	3	14.3	3	95	4	79	65	0	0	34	0.93
546269--546358	31	3.0	29	78	6	90	48	10	7	33	1.65
546276--546358	29	2.8	29	83	5	103	48	10	7	33	1.66
558894--558924	14	2.2	14	100	0	62	54	19	0	25	1.44
559667--559708	23	1.9	21	85	9	57	23	0	7	69	1.13
571462--571493	2	16.0	2	100	0	64	50	0	0	50	1.00
572517--572653	59	2.3	58	81	7	150	54	8	12	24	1.66
572598--572652	28	2.0	28	81	0	65	56	7	10	25	1.59
573516--573547	11	3.1	11	82	17	50	46	0	0	53	1.00
574107--574154	15	3.2	16	75	19	50	62	22	0	14	1.32
574189--574244	23	2.4	23	85	8	69	50	26	3	19	1.64
577251--577349	49	2.0	49	100	0	198	45	12	20	22	1.83
585642--585676	14	2.5	13	86	13	52	77	0	0	22	0.78
586626--586671	23	2.0	23	83	8	58	39	8	17	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
592993--593031	20	1.9	21	89	5	62	53	7	0	38	1.30
593699--593762	29	2.2	29	82	2	74	64	1	1	32	1.13
606390--606433	18	2.5	17	78	10	52	43	20	0	36	1.52
609394--609445	26	2.0	26	92	0	86	28	21	13	36	1.91
610326--610375	22	2.3	21	82	6	55	26	4	2	68	1.18
618439--618482	17	2.6	16	82	7	52	68	0	4	27	1.09
621700--621943	131	1.8	133	85	3	350	28	15	16	39	1.89
621833--622243	163	2.6	156	77	9	414	31	15	16	36	1.90
629061--629311	126	1.9	128	88	4	380	25	17	22	34	1.96
642390--642444	27	2.0	27	100	0	110	54	7	3	34	1.46
644210--644283	30	2.5	30	100	0	148	45	9	6	37	1.63
649428--649542	51	2.3	51	93	0	203	57	0	6	34	1.32
650102--650145	20	2.1	21	83	4	54	31	4	2	61	1.28
652625--652660	3	12.0	3	100	0	72	33	0	0	66	0.92

Tables:   1   2

The End!