genome.fa.s15288.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015288.1 Kokia drynarioides strain JFW-HI SEQ_130333, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  637797

Tables:   1   2   3   

This is table  2  of  3  ( 247 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347851--347882	15	2.1	15	94	0	55	15	3	53	28	1.57
352638--352685	19	2.4	20	89	6	71	62	10	10	16	1.53
359219--359253	18	2.0	17	94	5	61	20	17	28	34	1.95
365618--365876	128	2.0	128	94	0	455	33	6	18	41	1.76
367785--367818	18	1.9	18	88	5	52	29	0	5	64	1.17
371439--371597	80	2.0	81	86	1	221	40	19	10	28	1.85
378142--378174	17	1.9	17	88	11	50	48	6	33	12	1.65
379813--379851	18	2.3	16	86	8	51	33	2	38	25	1.70
381909--381962	26	2.1	26	86	6	74	44	11	3	40	1.58
382075--382192	59	2.0	61	86	5	168	50	5	1	42	1.37
382170--382259	17	5.4	17	67	15	71	52	3	0	44	1.17
386200--386230	9	3.3	9	95	4	53	58	0	0	41	0.98
386701--386815	59	1.9	60	87	5	171	49	0	3	46	1.25
389094--389341	52	4.8	52	85	2	318	33	25	13	27	1.93
394158--394227	35	2.0	35	100	0	140	25	17	5	51	1.67
398280--398338	31	1.9	30	93	3	100	42	3	22	32	1.70
400728--400895	60	2.7	61	89	5	250	52	3	0	43	1.23
401422--401809	40	9.8	40	77	6	319	24	19	26	29	1.98
401423--401809	79	4.9	79	82	4	324	24	19	26	29	1.98
401422--401809	117	3.3	118	79	6	358	24	19	26	29	1.98
401831--401973	50	2.9	50	89	4	200	20	26	18	34	1.96
406674--406753	31	2.6	30	86	3	99	43	10	16	30	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
409053--409098	25	1.9	25	86	8	69	32	4	6	56	1.45
409478--409516	14	2.7	15	80	8	53	25	7	10	56	1.59
412361--412411	6	8.3	6	78	4	57	17	1	1	78	0.94
412361--412412	5	9.8	5	82	12	52	19	1	1	76	0.97
413318--413398	15	5.1	16	74	15	78	80	0	13	6	0.89
413318--413362	23	1.9	24	90	4	74	82	0	11	6	0.84
413315--413398	33	2.5	33	80	14	93	79	0	14	5	0.90
413317--413396	9	9.4	9	77	6	55	81	0	12	6	0.87
413728--413754	9	3.0	9	100	0	54	11	11	33	44	1.75
414867--414905	14	2.7	15	80	8	53	25	7	10	56	1.59
417794--417839	25	1.9	23	86	8	65	32	6	6	54	1.52
419493--419534	21	2.0	22	90	4	68	78	0	2	19	0.86
419491--419533	11	3.9	11	78	9	52	79	0	2	18	0.85
423476--423517	19	2.1	21	87	12	63	57	2	2	38	1.25
423870--423911	18	2.3	18	88	8	59	30	0	2	66	1.04
424294--424453	41	3.8	43	78	5	177	41	16	24	17	1.89
438270--438570	43	7.0	43	86	0	388	30	19	25	23	1.98
438969--439005	11	3.3	11	88	7	56	62	10	2	24	1.41
439036--439075	19	2.3	19	87	12	59	42	0	2	55	1.13
439111--439149	18	2.2	18	86	4	53	58	0	0	41	0.98
439127--439167	22	2.0	21	85	9	57	48	4	0	46	1.23
439153--439197	17	2.6	18	76	16	51	26	4	0	68	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441006--441104	48	2.1	48	100	0	198	48	13	10	28	1.74
442344--442384	21	2.0	21	90	0	64	53	2	2	41	1.27
449011--449067	5	11.2	5	76	10	53	35	14	24	26	1.93
450187--450281	38	2.5	39	75	19	101	61	3	1	34	1.19
450158--450241	29	2.9	29	78	5	89	61	3	1	33	1.20
450134--450244	19	5.9	18	68	15	64	65	3	0	29	1.15
450814--450894	39	2.1	39	88	4	119	32	16	13	38	1.87
451566--451610	22	2.0	22	83	8	56	37	2	2	57	1.23
451586--451652	29	2.3	29	85	7	84	38	2	1	56	1.24
456853--456890	14	2.5	15	87	8	51	71	0	7	21	1.11
457070--457328	30	9.0	29	76	9	210	35	3	26	35	1.72
457081--457328	59	4.3	59	83	5	317	35	2	25	35	1.71
457070--457286	29	7.6	28	73	17	119	36	3	25	34	1.74
458939--459031	17	5.4	17	88	3	141	55	2	2	39	1.24
458939--459031	35	2.7	36	86	3	88	55	2	2	39	1.24
458939--459031	6	16.0	6	71	14	70	55	2	2	39	1.24
458939--459045	52	2.1	52	87	3	153	53	2	3	40	1.33
459423--459783	39	9.3	39	71	9	236	25	19	30	24	1.98
459393--459856	78	5.9	78	84	1	489	26	19	29	25	1.99
459445--459822	39	9.7	39	71	6	201	25	20	29	24	1.99
467890--467961	36	2.0	36	91	5	119	13	26	13	45	1.81
470603--470630	11	2.5	11	100	0	56	50	25	10	14	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471794--472079	29	9.8	28	78	6	232	39	2	23	34	1.69
471768--471927	59	2.7	59	75	7	146	43	4	17	34	1.69
471794--472066	88	3.1	85	79	7	271	39	2	23	34	1.70
471774--472052	117	2.4	116	80	5	285	40	2	21	35	1.68
473865--473955	6	16.0	6	69	15	59	56	3	2	38	1.28
473865--473955	34	2.7	34	93	3	148	56	3	2	38	1.28
473865--473955	17	5.4	17	82	4	121	56	3	2	38	1.28
474966--475026	27	2.1	29	91	8	99	60	1	0	37	1.07
474989--475022	16	2.1	17	88	5	52	70	0	0	29	0.87
474963--475027	28	2.2	29	87	12	98	60	1	0	38	1.07
478281--478341	29	2.1	30	87	3	88	60	0	1	37	1.07
480963--481022	21	2.8	21	77	12	68	33	1	8	56	1.39
480989--481046	21	2.8	20	84	10	64	32	0	5	62	1.18
481021--481052	16	2.0	16	93	0	55	31	0	3	65	1.08
481964--482020	29	1.9	30	86	10	82	28	5	5	61	1.39
485146--485189	22	1.9	24	86	9	65	31	2	15	50	1.57
508397--508437	20	2.0	21	85	4	57	36	4	14	43	1.67
508434--508480	22	2.1	23	84	11	62	31	4	19	44	1.70
511131--511297	74	2.3	74	88	4	264	36	13	28	21	1.91
513520--513571	22	2.3	24	87	9	74	36	3	15	44	1.65
515622--515675	21	2.6	21	79	5	65	31	25	14	27	1.95
524438--524508	37	1.9	37	86	11	101	39	1	2	56	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526656--526718	32	2.0	32	81	6	74	39	15	3	41	1.64
527700--527732	14	2.3	15	89	5	50	21	0	36	42	1.53
527744--527783	21	1.9	21	90	10	64	17	0	37	45	1.49
528129--528169	20	1.9	22	85	14	59	58	0	0	41	0.98
528143--528193	16	3.2	15	74	20	50	60	1	0	37	1.08
528676--528735	28	2.1	29	81	9	70	43	1	1	53	1.20
530295--530346	19	2.7	19	84	3	59	71	3	1	23	1.13
530311--530353	19	2.3	18	84	11	52	81	2	2	13	0.89
531632--531686	25	2.3	24	84	9	69	52	0	7	40	1.29
533831--533869	16	2.4	16	87	8	53	46	2	2	48	1.29
548721--548898	37	4.8	37	84	2	241	32	30	21	15	1.94
564125--564347	123	1.8	123	86	5	326	41	15	20	22	1.89
564448--564641	75	2.6	74	84	4	237	41	17	19	21	1.90
564524--564754	122	1.9	122	87	0	336	41	19	20	19	1.91
564386--564749	197	1.8	198	86	2	536	40	18	20	20	1.91
567876--567931	9	5.5	11	87	8	50	3	32	0	64	1.11
567891--567945	3	18.7	3	88	3	76	0	30	0	69	0.89
590173--590364	51	3.8	51	93	0	321	27	28	19	23	1.99
590175--590360	25	7.3	25	72	17	150	26	29	20	23	1.99
591722--591830	53	2.1	53	100	0	218	22	21	12	43	1.86
594985--595029	24	1.9	23	82	13	56	6	44	0	48	1.29
595232--595268	19	1.9	19	88	0	56	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
595646--595682	19	1.9	19	88	0	56	43	10	0	45	1.39
609869--609922	23	2.3	23	81	6	65	33	20	14	31	1.93
613483--613731	53	4.7	53	85	0	329	34	22	15	27	1.94
613485--613731	106	2.3	105	90	0	377	34	22	15	27	1.94
621584--621645	24	2.6	24	94	5	108	37	29	6	27	1.82
622201--622396	53	3.7	53	83	0	259	37	21	12	28	1.90
627856--627953	36	2.7	35	90	6	151	27	24	16	31	1.96
635501--635676	19	9.3	19	79	2	183	22	25	20	32	1.98
635525--635676	57	2.7	57	85	0	205	21	25	21	32	1.98
636279--636340	18	3.4	18	93	0	97	50	17	9	22	1.75

Tables:   1   2   3