genome.fa.s15292.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015292.1 Kokia drynarioides strain JFW-HI SEQ_130337, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  338957

Tables:   1   2   

This is table  2  of  2  ( 172 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261641--261678	3	12.7	3	100	0	76	68	0	0	31	0.90
262474--262502	14	2.0	15	93	6	51	37	0	6	55	1.27
263132--263156	2	12.5	2	100	0	50	52	0	0	48	1.00
266579--266670	9	10.4	9	70	20	52	69	3	2	25	1.15
266687--266712	13	2.0	13	100	0	52	76	0	0	23	0.78
266819--266852	17	1.9	18	88	5	52	76	0	0	23	0.79
266836--266864	10	3.0	10	95	5	51	62	0	0	37	0.96
266881--266950	20	3.7	20	69	9	56	30	8	2	58	1.42
266941--267059	30	4.0	29	75	8	96	34	3	0	61	1.18
267147--267314	90	1.9	89	87	6	250	40	10	14	34	1.80
269557--269606	19	2.7	19	84	3	57	24	20	30	26	1.98
280806--280859	21	2.6	21	78	0	63	35	11	22	31	1.89
287167--287213	24	1.9	25	86	4	69	10	4	4	80	0.98
292933--293043	48	2.3	48	93	0	177	26	13	9	51	1.70
292933--293031	24	4.1	24	98	0	189	25	12	8	54	1.64
294969--295043	24	3.1	24	88	0	105	24	10	9	56	1.63
294977--295059	24	3.4	25	83	5	73	26	12	8	53	1.66
296974--297048	24	3.1	24	88	0	114	25	13	8	53	1.66
307725--307770	10	4.9	10	82	12	53	73	2	4	19	1.10
307736--307770	18	1.9	18	94	0	61	68	2	5	22	1.24
307788--307856	5	13.4	5	77	13	61	21	1	2	73	1.04
307810--307848	9	4.1	9	87	12	60	23	0	0	76	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307804--307854	20	2.5	20	100	0	102	25	0	0	74	0.82
308782--308831	11	4.5	11	82	9	57	76	4	10	10	1.15
308815--308852	18	2.1	18	95	0	67	76	0	13	10	1.02
309858--309903	25	1.9	25	86	8	69	32	4	6	56	1.45
311724--311783	29	2.1	29	100	0	120	25	6	20	48	1.73
313537--313593	27	2.1	27	83	0	69	33	10	26	29	1.90
313576--313764	57	3.3	55	79	6	209	35	2	28	32	1.71
313610--313764	28	5.6	27	82	6	166	36	2	26	34	1.70
313576--313769	85	2.3	86	83	7	236	36	2	28	32	1.71
314821--314863	20	2.2	20	87	8	61	44	0	2	53	1.13
314829--314996	3	54.7	3	83	7	203	35	1	1	61	1.14
320534--320701	85	2.0	85	82	6	207	21	22	19	36	1.95
320468--320955	209	2.3	208	89	2	717	22	21	18	37	1.94
320743--320908	85	2.0	85	86	2	235	22	24	16	35	1.95
322129--322190	6	10.5	6	79	10	56	27	22	0	50	1.50
324193--324350	41	3.8	41	85	5	185	32	17	13	36	1.89
330690--330842	82	1.9	82	91	2	254	23	20	24	32	1.98
331347--331372	8	3.2	8	100	0	52	23	11	11	53	1.69
333388--333417	13	2.2	14	94	5	53	46	0	20	33	1.51
334779--334814	18	2.0	18	94	0	63	63	0	19	16	1.30
334781--334814	12	2.8	12	86	0	50	61	0	20	17	1.34
336977--337008	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338061--338122	28	2.2	28	79	0	70	25	11	30	32	1.91
338087--338269	60	3.1	58	79	10	192	37	5	24	33	1.78
338107--338408	30	10.2	30	70	14	146	40	2	23	33	1.69
338102--338387	60	4.8	57	76	13	188	39	3	24	32	1.71
338178--338398	88	2.5	88	83	4	250	40	2	23	33	1.67
338162--338398	58	4.0	59	75	10	209	40	2	24	32	1.67
338178--338377	30	6.8	28	77	10	177	40	2	25	32	1.69
338166--338398	118	2.0	119	82	7	287	41	2	23	33	1.66

Tables:   1   2

The End!