Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015294.1 Kokia drynarioides strain JFW-HI SEQ_130339, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  417562

Tables:   1   2   

This is table  2  of  2  ( 178 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
328063--328138
29
2.7
29
83
2
82
28
6
30
34
1.83
328150--328310
88
1.8
87
84
9
211
34
5
26
33
1.80
328276--328589
29
10.8
29
72
15
165
36
3
24
35
1.74
328237--328575
59
5.8
59
79
6
293
36
4
23
35
1.74
328505--328599
29
3.2
29
86
4
102
35
4
21
38
1.73
328266--328599
117
2.9
112
78
11
331
36
4
23
35
1.75
330448--330508
6
10.7
6
74
10
56
57
1
0
40
1.08
330438--330508
17
4.2
17
92
0
115
59
1
1
38
1.15
341698--341731
16
2.1
16
100
0
68
44
17
20
17
1.87
347917--348010
49
1.9
48
89
6
145
35
7
14
42
1.74
348072--348384
29
10.8
29
82
7
332
33
3
28
34
1.74
349525--349567
3
13.7
3
85
9
50
39
0
0
60
0.97
349525--349580
19
2.8
19
89
5
76
42
0
0
57
0.99
350335--350415
6
14.0
6
76
17
82
54
1
2
41
1.21
350335--350443
17
6.4
17
84
4
148
56
1
1
39
1.20
350337--350445
11
10.1
11
69
19
61
57
1
1
38
1.20
350848--351829
205
4.8
205
88
1
1320
22
23
19
34
1.96
360997--361055
29
2.0
29
100
0
118
25
30
20
23
1.98
363611--363908
29
10.2
30
84
7
204
34
3
28
33
1.75
363624--363908
58
4.9
58
83
7
337
33
3
28
33
1.76
365823--365908
37
2.4
36
88
3
120
55
3
2
38
1.29
365814--365908
18
5.3
18
76
6
86
53
3
2
41
1.28
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
365841--365907
17
3.8
17
78
9
71
58
4
1
35
1.28
367932--367967
14
2.6
14
95
0
63
27
22
8
41
1.82
368148--368191
14
2.8
16
80
16
56
52
0
0
47
1.00
368340--368656
161
2.0
161
90
2
503
35
6
21
35
1.80
368683--368722
16
2.4
17
87
8
55
45
2
0
52
1.14
369101--369150
19
2.5
20
84
9
59
44
2
0
54
1.11
369075--369146
23
3.2
23
73
20
62
38
4
1
55
1.28
372590--373210
59
10.5
58
77
12
471
25
20
17
37
1.94
372590--373210
119
5.3
119
76
13
550
25
20
17
37
1.94
372590--373210
182
3.5
179
76
14
556
25
20
17
37
1.94
376783--376830
12
3.7
12
75
20
51
52
0
8
39
1.32
376944--377332
84
4.5
86
91
2
579
43
5
4
46
1.46
378523--378566
20
2.3
19
85
11
63
22
6
2
68
1.25
379777--379831
17
3.5
16
71
19
53
25
10
3
60
1.47
379734--379831
30
3.3
30
89
0
124
27
7
4
61
1.41
380640--380851
59
3.6
56
73
14
162
39
11
17
31
1.86
380907--381076
62
2.9
58
74
18
152
37
12
19
30
1.89
380932--381076
61
2.4
63
78
15
155
37
11
19
32
1.87
390016--390042
14
1.9
14
100
0
54
0
33
22
44
1.53
390975--391039
24
2.6
24
77
18
62
60
6
1
32
1.31
391502--391541
2
20.0
2
100
0
80
50
0
0
50
1.00
397430--397490
22
2.8
22
95
2
106
72
4
11
11
1.27
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
398242--398282
14
3.1
14
76
16
52
75
4
4
14
1.14
398271--398315
19
2.4
19
85
7
56
60
4
0
35
1.17
398918--399114
106
1.8
108
81
4
247
26
23
11
38
1.89
399345--399374
15
1.9
16
93
6
53
66
0
16
16
1.25
399336--399379
22
2.0
22
82
8
54
68
0
13
18
1.22
400169--400211
19
2.3
19
84
8
52
58
4
0
37
1.19
404345--404376
16
2.0
16
100
0
64
31
6
25
37
1.81
405431--405488
21
2.7
22
81
7
66
72
3
12
12
1.24
406294--406336
19
2.3
19
84
8
52
58
4
0
37
1.19
406009--406674
347
1.9
347
95
1
1210
41
10
12
34
1.79
413699--413731
16
2.1
16
88
11
50
51
0
6
42
1.26
414248--414317
33
2.1
33
82
10
81
40
10
2
47
1.52
414890--414926
17
2.2
18
90
9
60
64
5
27
2
1.28
416814--416876
23
2.7
23
87
0
81
26
15
19
38
1.92

Tables:   1   2

The End!