genome.fa.s15298.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015298.1 Kokia drynarioides strain JFW-HI SEQ_130343, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  570056

Tables:   1   2   

This is table  1  of  2  ( 143 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12888--12961	38	1.9	39	83	2	96	40	18	14	25	1.89
18986--19015	15	1.9	16	93	6	53	0	33	0	66	0.92
23550--23664	57	2.0	58	91	1	187	46	16	0	36	1.47
30884--31141	30	8.8	29	73	12	215	28	4	32	34	1.77
30884--31141	58	4.4	60	84	5	323	28	4	32	34	1.77
31693--31803	31	3.7	30	80	8	127	36	33	1	27	1.68
31758--31848	44	2.0	45	87	2	130	32	31	4	30	1.77
31802--32203	30	13.6	29	74	13	304	34	34	3	27	1.74
31697--31907	104	2.0	105	84	6	277	35	33	2	28	1.72
31696--31938	135	1.8	135	83	5	330	35	33	3	27	1.73
31802--32203	59	6.8	60	89	2	609	34	34	3	27	1.74
38673--38702	15	2.1	14	93	6	51	0	16	0	83	0.65
38673--38702	7	4.1	7	91	8	51	0	16	0	83	0.65
45700--45742	16	2.7	16	77	0	50	55	2	2	39	1.25
61566--61937	192	1.9	192	94	0	654	36	13	28	21	1.92
62064--62133	34	2.0	35	91	8	115	38	11	38	11	1.78
62181--62261	41	2.0	41	97	0	153	34	7	12	45	1.70
66429--66465	14	2.5	16	79	20	53	27	8	0	64	1.21
66688--66718	6	5.2	6	92	0	53	48	32	3	16	1.62
87764--87812	22	2.4	21	83	12	66	36	0	2	61	1.08
92322--92364	22	2.0	22	81	9	52	37	6	2	53	1.41
98095--98133	19	2.1	19	90	0	60	48	15	15	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
101563--101616	28	1.9	28	84	0	72	38	0	9	51	1.34
106386--106492	9	11.1	9	71	12	61	57	1	4	36	1.31
106396--106492	19	4.9	20	69	16	60	56	2	5	36	1.33
106388--106494	38	2.8	40	81	9	107	57	1	4	35	1.30
106439--106499	20	3.3	18	71	10	52	60	0	3	36	1.13
108555--108640	27	3.1	26	74	24	70	32	5	3	58	1.39
108572--108644	26	2.8	26	78	14	78	32	5	4	57	1.41
109713--110029	103	3.1	103	97	0	589	23	16	19	40	1.91
114203--114285	15	5.5	15	80	0	76	18	19	36	26	1.94
128373--128406	16	2.2	16	89	5	52	35	11	11	41	1.78
129313--129378	19	3.4	19	79	6	62	54	10	0	34	1.35
129393--129427	10	3.5	10	85	14	54	71	0	2	25	1.00
131439--131465	2	13.5	2	100	0	54	51	0	0	48	1.00
134176--134229	24	2.2	25	83	12	67	27	0	5	66	1.13
135994--136029	2	18.0	2	100	0	72	50	0	50	0	1.00
140669--140729	26	2.6	22	74	18	59	50	1	1	45	1.21
141616--141665	8	5.6	9	79	11	50	64	0	4	32	1.12
141590--141648	29	2.0	29	80	6	66	57	0	1	40	1.09
143217--143608	193	2.0	193	98	0	766	39	14	6	39	1.71
146259--146292	15	2.3	15	90	5	52	67	0	20	11	1.21
149530--149598	31	2.3	29	80	5	84	33	1	11	53	1.46
188347--188385	18	2.2	18	100	0	78	64	10	15	10	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
188804--188922	60	2.0	60	100	0	238	36	16	8	37	1.79
193987--194025	19	2.0	21	90	10	64	56	0	5	38	1.22
193979--194031	19	2.6	21	82	8	56	58	0	3	37	1.16
197071--197146	31	2.5	29	75	10	71	34	9	14	42	1.78
197556--197584	15	1.9	15	100	0	58	34	0	6	58	1.25
197792--197830	18	2.2	18	90	0	60	58	0	7	33	1.26
197935--197977	18	2.4	18	96	0	77	30	11	4	53	1.57
201863--202025	60	2.7	59	82	4	193	25	17	9	47	1.77
210265--210314	23	2.1	24	82	10	59	38	10	18	34	1.84
214509--214551	21	2.1	20	82	4	50	18	6	4	69	1.29
216724--216793	33	2.1	33	97	0	131	31	12	15	40	1.85
216839--216886	23	2.1	23	96	0	87	41	31	6	20	1.77
229467--229515	25	2.0	24	88	4	71	57	2	0	40	1.10
233751--234011	129	2.0	131	89	4	402	42	9	4	43	1.56
235610--235638	14	2.0	15	93	6	51	62	17	0	20	1.33
239979--240010	7	4.6	7	92	0	55	59	3	0	37	1.13
250338--250384	24	1.9	24	82	4	58	42	2	6	48	1.40
250717--250905	30	6.3	30	78	3	155	35	23	6	34	1.80
250717--250899	61	3.0	60	79	12	180	36	22	6	34	1.79
250716--250903	60	3.1	60	78	14	190	36	22	6	35	1.80
250921--250979	26	2.4	24	79	17	68	28	1	5	64	1.24
250913--250982	31	2.4	29	78	7	70	28	1	5	64	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
250950--250998	20	2.7	19	79	17	52	28	0	8	63	1.23
255228--255252	2	12.5	2	100	0	50	48	0	0	52	1.00
257060--257133	21	3.5	21	90	0	103	14	55	6	22	1.63
264003--264057	6	8.7	6	88	9	74	0	60	0	40	0.97
266931--267003	33	2.2	33	90	0	110	47	16	5	30	1.69
269374--269403	15	1.9	16	93	6	53	26	0	0	73	0.84
271829--272042	71	3.0	71	100	0	428	53	16	4	25	1.61
272168--272200	16	2.0	17	88	5	50	15	39	3	42	1.62
274069--274119	21	2.5	21	87	9	70	66	7	1	23	1.28
281534--282191	190	3.5	186	78	6	601	43	17	19	19	1.88
287291--287339	24	2.0	25	84	8	64	46	0	2	51	1.12
287368--287431	30	2.1	30	82	5	76	46	3	10	39	1.55
292738--292771	17	2.0	17	100	0	68	17	5	5	70	1.28
296701--296734	13	2.6	13	90	0	50	70	11	8	8	1.34
297493--297671	86	2.1	86	81	0	205	30	19	14	35	1.92
314355--314421	31	2.2	31	91	0	107	35	4	13	46	1.63
326113--326160	20	2.4	19	83	16	62	37	0	0	62	0.95
327244--327284	7	6.0	7	94	5	75	41	0	43	14	1.45
334166--334246	39	2.0	40	97	2	155	27	16	12	44	1.83
335838--335907	23	3.2	23	64	15	67	27	7	15	50	1.70
335844--335912	19	3.1	24	60	23	60	27	7	13	52	1.66
335822--335912	42	2.2	42	100	0	182	24	6	14	54	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337892--337935	10	4.1	11	82	11	56	27	2	0	70	0.99
337894--337937	11	4.2	10	80	11	52	27	2	0	70	0.99
339358--339394	3	12.3	3	100	0	74	67	0	0	32	0.91
342432--342811	132	2.9	132	84	5	466	22	19	17	40	1.91
349469--350393	313	2.9	313	88	3	1284	36	20	13	29	1.91
367754--367802	25	2.0	25	95	0	89	38	4	6	51	1.46
367877--367957	30	2.6	33	76	20	86	48	0	2	49	1.14
368861--368961	34	3.0	34	89	1	141	36	8	15	38	1.79
380649--381008	121	3.0	120	87	5	474	25	15	24	34	1.95
382578--382636	31	1.9	31	89	0	91	33	1	15	49	1.55
407684--407721	18	2.3	18	86	13	55	57	0	13	28	1.36
417467--417525	29	2.1	29	81	9	68	40	10	3	45	1.54
420227--420295	8	8.1	8	70	17	50	71	1	0	27	0.95
420746--420788	14	3.2	13	84	15	52	25	0	2	72	0.97
425254--425310	23	2.5	22	77	11	62	36	1	1	59	1.18
436528--436658	65	2.0	65	98	0	253	36	10	22	30	1.88
447136--447169	3	11.3	3	93	0	59	35	29	0	35	1.58
449912--449946	3	11.7	3	87	0	52	0	60	0	40	0.97
449973--450207	78	3.0	78	88	0	344	31	24	21	22	1.98
450999--451352	194	1.8	190	89	4	559	20	13	19	46	1.83
452683--452713	14	2.2	14	94	0	53	32	3	19	45	1.66
452697--452742	20	2.4	19	85	10	58	30	0	15	54	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461004--461044	18	2.3	18	84	16	50	68	2	4	24	1.22
462598--462825	122	1.9	122	88	5	354	22	14	23	39	1.91
464507--464627	60	2.0	62	88	9	185	52	24	14	7	1.67
466609--466638	6	5.0	6	95	0	51	33	13	50	3	1.58
466919--467278	174	2.0	175	93	3	605	16	19	29	35	1.93
472950--472999	24	2.0	25	84	7	66	34	8	0	58	1.28
489132--489175	21	2.0	22	82	4	54	56	0	0	43	0.99
490237--490269	12	2.8	12	86	4	50	0	18	12	69	1.18
492434--492465	6	5.3	6	100	0	64	84	0	15	0	0.63
498008--498115	30	3.5	30	74	20	87	48	1	1	48	1.23

Tables:   1   2