genome.fa.s15304.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015304.1 Kokia drynarioides strain JFW-HI SEQ_130349, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  160460

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364--412	21	2.3	21	76	13	55	38	0	18	42	1.50
3916--3969	27	2.0	27	82	7	65	51	7	0	40	1.30
3970--4312	172	2.0	173	98	1	672	35	6	23	34	1.80
16157--16276	58	2.1	59	84	7	156	43	15	7	34	1.74
21055--21781	274	2.6	278	80	9	843	34	17	12	35	1.87
22451--22500	24	2.1	24	85	3	66	60	2	4	34	1.27
23477--23518	22	1.9	22	95	0	75	42	9	4	42	1.58
26565--26596	16	2.0	16	100	0	64	37	0	25	37	1.56
28718--29112	201	2.0	193	85	7	526	25	10	15	48	1.77
32217--32259	19	2.4	19	88	11	65	48	0	0	51	1.00
51363--51389	2	13.5	2	100	0	54	51	0	0	48	1.00
62164--62193	15	2.0	15	93	0	51	46	3	0	50	1.18
66234--66367	72	1.9	72	91	0	223	36	8	14	41	1.75
72294--72345	22	2.4	21	81	6	59	9	11	5	73	1.25
75963--76028	28	2.4	28	89	5	89	39	6	3	51	1.42
75974--76031	28	2.1	28	100	0	116	34	6	3	55	1.44
79448--79485	20	1.9	20	89	10	60	39	2	5	52	1.38
82085--82150	10	6.4	10	72	10	53	37	1	0	60	1.06
87104--87143	6	6.5	6	83	16	55	32	0	0	67	0.91
87104--87164	13	4.8	13	78	6	63	36	1	0	62	1.05
87104--87164	25	2.4	26	83	8	81	36	1	0	62	1.05
89016--89207	96	2.0	95	81	8	219	36	12	20	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89591--89640	25	2.0	24	84	3	64	34	4	24	36	1.74
89616--90039	59	7.2	59	87	5	594	29	4	30	35	1.77
91148--91189	15	2.8	15	92	0	66	26	4	11	57	1.54
97184--97227	7	6.3	7	100	0	88	27	0	0	72	0.85
100088--100123	19	1.9	19	88	5	56	38	8	5	47	1.57
102752--102835	29	3.0	28	79	14	86	33	0	3	63	1.12
105312--105346	9	3.9	9	89	10	54	57	0	0	42	0.99
106269--106312	3	14.7	3	100	0	88	0	31	0	68	0.90
108578--108632	3	18.3	3	96	0	101	65	0	32	1	1.03
111133--111723	71	8.2	71	76	7	404	36	13	21	27	1.92
111133--111723	145	4.1	143	76	8	525	36	13	21	27	1.92
111133--111723	36	16.3	37	79	8	506	36	13	21	27	1.92
111719--112138	141	3.0	140	86	3	556	32	21	19	27	1.97
115030--115296	98	2.7	99	87	2	376	38	19	25	17	1.93
115046--115328	49	5.8	49	72	10	218	38	18	26	16	1.92
115210--115462	136	1.9	137	84	2	348	37	22	22	16	1.93
119055--119081	6	4.5	6	100	0	54	14	33	0	51	1.43
121381--121475	29	3.3	29	68	11	95	50	4	10	34	1.56
121370--121501	58	2.3	58	97	0	246	51	6	8	34	1.57
124882--124948	21	3.1	21	82	14	82	73	0	23	2	0.97
124898--124946	3	16.7	3	80	4	55	71	0	26	2	0.97
124901--124946	18	2.6	18	86	10	67	71	0	26	2	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124892--124948	9	6.4	9	74	11	55	73	0	22	3	0.98
130746--130774	2	14.5	2	100	0	58	51	0	0	48	1.00
131963--132006	17	2.5	17	81	3	52	38	2	4	54	1.33
132629--132677	15	3.1	15	77	11	53	51	0	2	46	1.12
132728--133870	587	2.0	577	99	0	2187	40	15	21	21	1.89
134432--134583	58	2.6	58	78	7	157	32	28	4	33	1.78
134492--134875	29	13.3	30	72	12	243	31	27	8	33	1.86
137658--137920	136	1.9	136	85	1	357	50	7	14	27	1.70
142498--142690	30	6.4	30	76	9	189	33	2	26	37	1.68
146419--146448	15	2.1	15	93	6	53	33	0	13	53	1.40
149026--149082	30	1.9	30	85	0	78	40	33	14	12	1.83
149065--149253	74	2.6	74	86	3	256	37	32	17	12	1.88
149059--149253	37	5.3	37	82	2	221	36	33	17	12	1.87
151025--151085	28	2.2	28	85	5	79	29	9	27	32	1.89
151187--151475	29	9.9	29	76	12	256	37	2	25	34	1.71
151184--151505	116	2.8	117	77	10	345	36	3	25	34	1.73
151158--151500	29	11.8	29	73	15	228	37	4	24	33	1.76
153401--153512	17	6.5	18	81	6	110	55	4	0	40	1.20
153420--153482	6	11.0	6	76	10	60	55	4	0	39	1.21
153422--153513	11	8.2	11	73	13	62	57	5	0	36	1.22
153434--153478	23	2.0	23	86	8	65	55	6	0	37	1.26
154229--154260	4	7.8	4	96	3	55	25	0	28	46	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
158971--159013	18	2.4	18	76	0	50	74	0	2	23	0.93

Tables:   1

The End!