genome.fa.s15310.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015310.1 Kokia drynarioides strain JFW-HI SEQ_130355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  579475

Tables:   1   2   

This is table  1  of  2  ( 232 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3645--3689	18	2.5	18	85	0	63	31	8	6	53	1.58
4507--4568	30	2.1	30	93	0	106	29	11	30	29	1.91
13689--13738	20	2.5	20	81	15	50	42	14	0	44	1.44
16635--16673	17	2.3	17	86	8	53	46	25	12	15	1.81
19351--19384	15	2.2	15	94	5	59	76	0	11	11	1.02
19328--19388	22	2.8	22	85	7	72	73	1	11	13	1.16
19350--19387	16	2.4	17	86	13	62	76	0	10	13	1.02
23780--23965	92	2.0	92	98	0	363	43	8	12	35	1.73
35939--36005	28	2.4	28	87	0	89	29	14	13	41	1.85
35955--36014	28	2.1	28	84	0	75	25	18	20	36	1.94
43274--43897	313	2.0	311	98	0	1194	28	12	21	37	1.90
50585--50791	32	6.4	32	81	8	215	33	19	17	29	1.95
50585--50791	96	2.1	97	82	7	242	33	19	17	29	1.95
69963--70007	22	2.0	22	95	0	81	31	24	0	44	1.54
79710--79892	52	3.5	52	81	3	188	22	15	24	37	1.93
79708--79892	26	7.1	26	69	4	140	23	15	23	37	1.92
82111--82169	27	2.1	30	81	12	72	42	1	6	49	1.39
84598--84648	21	2.4	21	84	15	70	31	9	31	27	1.89
85070--85129	25	2.4	24	86	10	84	30	1	5	63	1.25
84985--85361	191	2.0	191	90	2	605	30	13	8	47	1.73
90757--90801	12	3.8	12	80	11	56	62	0	35	2	1.08
91195--91239	17	2.6	17	82	6	56	17	11	11	60	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91432--91481	24	2.1	24	85	7	66	28	12	16	44	1.83
96541--96590	12	4.2	12	80	10	57	4	32	0	64	1.12
107527--107626	47	2.1	48	96	1	184	43	14	7	36	1.72
129964--130058	30	3.2	30	90	0	145	21	3	16	58	1.51
133777--133815	15	2.7	15	88	7	55	66	0	33	0	0.92
136697--136721	12	2.1	12	100	0	50	20	8	16	56	1.65
136878--136925	19	2.6	19	77	9	55	75	6	6	12	1.19
139086--139117	5	6.4	5	92	0	55	0	15	0	84	0.63
139687--139747	17	3.6	17	81	0	68	49	4	19	26	1.69
150668--150709	15	2.8	16	86	13	54	30	21	7	40	1.80
179806--179861	20	2.7	21	81	15	71	51	1	0	46	1.11
180222--180263	20	2.2	19	86	4	57	7	19	21	52	1.69
181151--181179	15	2.0	15	93	6	51	68	0	31	0	0.89
197036--197065	12	2.4	12	94	5	51	73	0	10	16	1.09
197052--197104	23	2.4	22	81	6	63	54	3	15	26	1.57
201654--201698	19	2.4	19	81	7	56	37	2	2	57	1.23
205224--205263	6	7.0	6	83	11	57	17	0	0	82	0.67
205228--205268	11	3.8	11	84	15	59	17	0	0	82	0.66
205224--205263	17	2.4	17	91	8	64	17	0	0	82	0.67
206044--206235	105	1.8	106	82	5	246	38	12	23	25	1.90
206796--206840	19	2.4	19	81	7	56	37	2	2	57	1.23
207642--207688	24	2.0	24	100	0	94	17	6	4	72	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211377--211477	30	3.3	29	73	16	80	56	1	0	41	1.10
213167--213209	21	2.0	21	86	8	61	41	0	0	58	0.98
222296--222585	52	5.6	52	88	1	411	26	15	22	35	1.94
222296--222585	156	1.9	156	90	0	463	26	15	22	35	1.94
231333--231375	22	1.9	23	85	4	61	27	6	4	60	1.43
238502--238640	51	2.7	51	85	2	190	29	17	26	25	1.98
239503--239541	19	2.1	19	95	0	69	38	10	17	33	1.84
254555--254600	25	1.9	25	86	8	69	34	4	6	54	1.46
255666--255708	18	2.3	19	88	8	61	23	2	2	72	1.08
258578--258624	12	4.2	11	84	12	60	23	2	0	74	0.93
258582--258623	6	7.3	6	83	5	52	19	2	0	78	0.86
258582--258624	5	7.8	5	85	14	50	20	2	0	76	0.89
260597--260642	25	1.9	25	86	8	69	34	4	6	54	1.46
269079--269135	29	2.0	28	93	3	96	42	5	19	33	1.74
269124--269323	29	6.8	27	75	12	121	37	2	23	37	1.67
269124--269323	59	3.4	57	78	9	199	37	2	23	37	1.67
269167--269331	88	1.9	88	83	7	219	37	3	23	35	1.71
271162--271204	6	7.7	6	80	15	56	55	0	0	44	0.99
271150--271204	16	3.4	16	87	2	74	50	0	3	45	1.19
271162--271203	11	3.8	11	84	9	50	54	0	0	45	0.99
271160--271221	17	3.7	17	86	2	81	58	4	0	37	1.20
271546--272153	39	15.7	39	70	11	338	25	20	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
271501--271768	78	3.4	78	82	2	302	25	20	30	23	1.98
271591--272152	117	4.9	117	74	9	388	24	20	30	24	1.98
271718--272116	153	2.6	151	82	5	424	24	19	30	25	1.98
271758--272116	78	4.7	78	84	6	410	24	18	30	25	1.98
271795--272116	77	4.2	77	84	6	402	25	18	30	25	1.98
276021--276358	29	11.7	29	80	6	232	32	2	26	37	1.72
276024--276180	57	2.7	58	83	7	196	30	2	29	37	1.71
276024--276389	58	6.3	58	77	10	259	32	3	26	37	1.72
276101--276390	88	3.3	87	79	6	300	33	2	25	37	1.71
276081--276387	29	10.5	30	80	9	253	33	2	25	38	1.70
278220--278296	6	13.7	6	72	13	65	54	2	0	42	1.14
278208--278296	17	5.4	16	80	6	97	51	2	2	43	1.26
278218--278313	17	5.7	17	85	1	122	56	5	0	38	1.22
278242--278296	11	4.9	11	77	4	56	56	3	0	40	1.17
282813--282845	3	11.0	3	100	0	66	33	0	0	66	0.92
287972--288414	215	2.1	216	91	0	717	32	22	14	29	1.94
294877--294923	22	2.2	22	84	3	60	42	17	2	38	1.61
295364--295459	50	1.9	51	86	2	140	38	20	16	23	1.93
297979--298026	23	2.1	23	84	0	60	10	25	20	43	1.83
298032--298086	22	2.4	24	84	6	62	14	23	29	32	1.94
298021--298100	23	3.5	23	81	6	83	12	21	28	37	1.90
302438--302623	11	17.6	11	64	22	60	48	3	1	45	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
302475--302632	35	4.6	35	74	13	132	47	4	1	46	1.30
302436--302621	96	1.9	97	87	3	277	47	4	1	46	1.31
309756--309792	16	2.3	17	86	9	51	16	5	27	51	1.66
315212--315340	51	2.6	52	81	10	144	53	5	1	39	1.33
318347--318408	20	3.2	20	73	17	58	22	3	22	51	1.62
334455--334481	11	2.5	11	100	0	54	22	7	7	62	1.46
336782--336980	107	1.9	107	98	1	391	36	15	5	42	1.70
343249--343308	27	2.2	27	90	0	102	48	5	10	36	1.59
343257--343314	27	2.1	27	87	0	80	50	5	10	34	1.59
356383--356451	36	1.9	36	87	0	102	8	23	30	37	1.85
358385--358484	52	1.9	52	89	4	157	48	8	1	43	1.39
359959--360004	24	1.9	24	95	0	83	30	2	21	45	1.64
359964--360018	24	2.3	24	84	6	67	32	5	16	45	1.70
360265--360319	22	2.5	22	82	8	67	70	12	10	5	1.31
369590--369663	28	2.6	28	79	14	80	33	9	21	35	1.86
369684--369934	30	8.4	30	66	17	96	37	5	22	33	1.79
369646--369746	28	3.5	29	71	14	82	36	5	22	34	1.79
369654--369840	59	3.2	58	80	6	175	37	6	22	33	1.80
369726--369805	29	2.7	29	74	12	74	40	7	20	32	1.80
369685--370078	59	6.6	57	77	10	176	36	4	23	35	1.75
369793--370078	59	4.8	60	80	10	182	36	3	23	36	1.71
369793--370111	30	10.7	30	79	8	298	36	3	23	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369878--370103	59	3.8	57	84	7	256	35	2	23	38	1.69
371763--371855	11	8.9	10	72	21	68	56	3	0	39	1.15
371777--371857	17	4.8	17	90	0	126	55	3	0	40	1.17
371763--371857	6	16.8	6	73	16	78	55	3	0	41	1.15
371763--371809	23	2.1	22	92	4	76	55	2	0	42	1.12
372135--372803	209	3.2	209	88	1	959	23	22	17	35	1.95
382964--383031	28	2.4	29	85	5	93	32	8	23	35	1.86
382964--383040	28	2.7	29	76	15	79	28	9	28	33	1.88
383014--383122	58	1.9	58	80	1	130	35	5	23	34	1.78
383044--383144	28	3.5	29	70	10	82	37	4	22	34	1.76

Tables:   1   2