genome.fa.s15310.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015310.1 Kokia drynarioides strain JFW-HI SEQ_130355, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  579475

Tables:   1   2   

This is table  2  of  2  ( 232 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383189--383378	29	6.5	28	73	14	134	38	3	22	35	1.72
383189--383410	30	7.5	29	74	11	130	38	3	22	36	1.70
383247--383417	30	5.8	29	77	5	146	36	2	21	38	1.69
383189--383439	59	4.2	58	79	7	204	37	3	21	37	1.71
383308--383439	30	4.5	30	77	11	114	35	3	21	39	1.71
385141--385182	10	3.9	10	82	17	57	54	2	0	42	1.13
387064--387105	11	3.9	11	81	6	59	71	0	4	23	1.05
387063--387102	21	1.9	21	100	0	80	75	0	5	20	0.99
387112--387170	6	10.3	6	80	7	52	16	3	3	76	1.06
387103--387173	5	13.2	5	78	14	54	18	2	4	74	1.10
387112--387173	17	3.6	17	75	14	65	17	3	3	75	1.07
388131--388164	13	2.6	13	90	0	59	79	8	0	11	0.94
389194--389239	25	1.9	25	86	8	69	34	2	6	56	1.37
397063--397115	19	2.7	19	80	8	63	58	5	1	33	1.32
397958--398033	21	3.6	21	78	7	91	52	10	19	17	1.73
399647--399680	18	1.9	17	88	5	50	58	0	2	38	1.13
402087--402132	24	1.9	24	90	0	74	36	17	13	32	1.88
405234--405281	20	2.5	19	77	12	53	50	0	4	45	1.21
407558--407817	23	11.6	23	76	11	200	41	22	24	11	1.87
407651--407838	46	4.1	46	89	5	258	39	23	25	11	1.88
407651--407838	23	8.2	22	83	7	198	39	23	25	11	1.88
407651--407838	69	2.7	69	88	4	256	39	23	25	11	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407901--407948	24	1.9	26	84	16	66	31	22	0	45	1.53
408070--408102	14	2.4	14	90	10	50	36	12	6	45	1.66
409071--409120	23	2.2	23	96	0	91	40	24	24	12	1.88
416863--416908	24	2.0	23	86	4	65	63	0	2	34	1.07
427420--427474	28	2.0	28	82	7	67	50	10	3	34	1.55
428826--428859	16	2.0	18	88	11	54	23	0	11	64	1.26
436138--436573	29	14.9	29	69	17	235	40	3	23	32	1.72
436138--436573	58	7.5	57	76	12	300	40	3	23	32	1.72
436550--436655	30	3.6	29	75	11	99	35	0	20	42	1.59
436197--436600	58	6.9	56	79	11	370	40	3	22	33	1.72
436549--436667	59	2.0	58	85	1	157	34	1	23	40	1.65
437732--437790	3	19.0	3	75	6	55	33	1	1	62	1.15
437720--437789	28	2.5	28	83	0	86	32	2	2	61	1.25
438527--438577	17	2.9	17	91	2	84	56	1	0	41	1.10
439455--439506	25	2.1	25	96	0	95	50	19	7	23	1.73
444103--444562	119	3.8	118	78	11	418	28	16	15	39	1.89
444114--444474	60	6.1	59	74	9	245	27	17	15	39	1.90
444401--444579	61	2.9	60	76	11	168	32	16	15	35	1.91
445417--445591	30	5.9	30	85	2	230	62	4	5	28	1.36
445417--445585	60	2.8	60	97	1	315	61	4	5	28	1.38
446704--446728	13	1.9	13	100	0	50	56	0	8	36	1.29
446875--446918	19	2.3	19	84	7	54	65	4	4	25	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450197--450363	62	2.7	60	80	8	185	41	14	15	28	1.86
450126--450463	61	5.8	60	74	17	225	38	15	17	28	1.90
450263--450460	107	1.8	108	87	1	299	39	13	17	30	1.87
450377--450563	96	1.9	97	89	1	286	40	15	14	28	1.87
450483--450683	60	3.3	60	81	10	257	39	13	16	29	1.88
452128--452155	5	5.6	5	100	0	56	17	0	0	82	0.68
452177--452208	3	10.7	3	93	0	55	0	62	0	37	0.95
452277--452310	12	2.8	12	86	0	50	52	23	5	17	1.66
455830--455891	29	2.1	30	84	3	81	29	12	25	32	1.93
455903--456257	30	11.9	30	74	12	216	38	2	22	36	1.69
456014--456126	59	1.9	59	82	7	140	41	4	19	34	1.71
456026--456219	59	3.3	59	78	9	164	39	2	20	38	1.65
456115--456286	90	1.9	90	80	4	204	36	3	22	37	1.72
457395--457421	3	9.0	3	100	0	54	33	0	0	66	0.92
458087--458178	6	15.7	6	77	17	86	54	3	1	41	1.24
458118--458178	23	2.7	23	89	2	97	57	3	0	39	1.15
458072--458207	17	7.5	17	75	14	101	53	5	2	38	1.38
458105--458195	41	2.2	41	88	3	130	56	6	0	37	1.26
460760--460830	33	2.2	33	87	5	99	59	0	11	29	1.32
460771--460838	33	2.1	33	97	0	127	55	0	13	30	1.38
462362--462531	29	5.9	28	75	9	153	32	0	29	37	1.62
462367--462637	59	4.6	57	78	9	240	34	1	25	38	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462396--462674	30	9.4	30	74	8	207	35	2	24	37	1.67
462420--462661	60	4.1	59	79	6	258	35	1	26	37	1.66
463612--463659	22	2.3	21	80	13	64	31	4	2	62	1.26
463599--463657	22	2.6	23	76	20	61	30	3	1	64	1.20
464402--464505	17	6.1	17	75	4	75	50	6	0	41	1.35
464439--464492	28	1.9	28	85	7	74	55	9	1	33	1.42
464905--465550	209	3.1	207	86	2	828	21	21	17	39	1.93
466040--466151	50	2.3	49	78	18	117	16	33	13	37	1.87
466076--466328	100	2.5	101	75	6	241	16	29	17	36	1.92
466058--466301	50	4.9	50	74	6	154	15	29	17	36	1.91
466183--466314	50	2.7	50	84	1	158	17	30	15	36	1.91
467210--467264	7	7.7	7	82	13	60	1	10	3	83	0.84
467211--467265	28	1.9	29	88	3	85	1	10	3	83	0.84
472620--472834	28	7.3	29	71	16	86	33	2	27	35	1.70
472662--472933	30	9.1	29	74	10	194	34	1	25	38	1.67
472617--472941	30	11.0	30	74	13	164	34	2	25	37	1.68
472648--472790	58	2.5	57	78	10	157	35	1	26	36	1.66
472749--472935	61	3.1	60	79	9	200	34	1	24	39	1.65
473877--473920	21	2.2	21	81	18	58	38	0	0	61	0.96
474806--474886	12	6.7	12	77	8	74	72	14	2	9	1.20
474803--474887	23	4.1	21	70	20	63	70	14	4	10	1.30
479288--479312	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482370--482469	31	3.3	30	71	13	87	50	14	10	26	1.73
483189--483250	20	3.2	19	76	10	63	30	1	1	66	1.11
486557--486619	30	2.2	30	86	11	87	39	0	4	55	1.21
493123--493147	11	2.3	11	100	0	50	36	0	16	48	1.46
496740--496766	2	13.5	2	100	0	54	51	0	48	0	1.00
504849--505014	82	2.0	83	94	1	289	33	6	15	45	1.70
505607--505640	6	5.7	6	92	0	50	79	0	0	20	0.73
505607--505649	12	3.5	12	80	3	50	74	0	0	25	0.82
505607--505649	18	2.3	18	88	4	59	74	0	0	25	0.82
512764--513022	138	1.9	138	96	0	482	42	14	6	37	1.71
512755--513044	138	2.1	138	90	0	481	41	13	7	37	1.73
531107--531156	22	2.3	22	82	0	64	22	38	18	22	1.94
533675--533780	53	2.0	53	100	0	212	24	13	20	41	1.88
549152--549218	33	2.0	33	97	0	125	53	10	8	26	1.64
549827--549861	13	2.7	13	90	0	52	54	5	25	14	1.62
550955--551032	23	3.5	22	81	8	95	11	23	21	43	1.85
552785--552821	19	2.0	19	89	5	58	21	13	16	48	1.80
552795--552856	29	2.1	29	100	0	124	17	9	22	50	1.75
553101--553155	22	2.5	22	87	0	83	23	5	21	49	1.70
555783--555831	21	2.3	21	85	0	71	38	28	18	14	1.90
557560--557607	24	2.0	24	95	0	87	58	6	16	18	1.59
575913--575967	17	3.2	17	78	2	56	30	0	3	65	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
578597--578825	30	7.8	29	83	9	250	31	2	30	34	1.72
578623--578829	58	3.5	58	83	9	260	30	2	32	34	1.71

Tables:   1   2

The End!