genome.fa.s15314.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015314.1 Kokia drynarioides strain JFW-HI SEQ_130359, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  241155

Tables:   1   2   

This is table  2  of  2  ( 170 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
154387--156029	208	7.9	208	85	1	2013	23	20	16	38	1.92
153838--154998	539	2.2	539	84	2	1508	24	20	15	39	1.91
154698--154790	48	1.9	48	88	0	141	23	23	15	37	1.93
154708--154864	85	1.8	85	88	0	242	22	24	15	37	1.93
154916--155072	85	1.8	85	86	0	224	23	23	15	37	1.93
153690--155206	747	2.0	747	88	2	2233	23	20	16	39	1.92
155540--155710	85	2.0	85	86	8	242	23	18	16	40	1.91
155960--156079	48	2.5	47	85	2	150	26	23	12	37	1.90
156045--156351	160	1.9	159	87	2	445	23	20	15	41	1.90
156549--156704	42	3.7	42	84	8	194	29	12	30	27	1.93
156546--156704	84	1.9	84	85	2	221	29	12	30	27	1.93
164265--164382	59	2.0	59	96	1	211	33	13	6	45	1.70
166291--166395	42	2.5	42	92	1	165	31	27	17	23	1.97
170770--170836	26	2.4	27	82	7	82	37	1	1	59	1.16
170793--170830	13	2.9	13	77	14	51	28	0	0	71	0.87
180371--180416	21	2.2	21	84	7	58	21	6	8	63	1.46
180855--181104	41	6.2	41	75	8	187	17	29	21	31	1.96
180953--180979	14	1.9	14	100	0	54	14	29	14	40	1.86
181108--181196	41	2.2	41	89	4	135	16	28	21	33	1.95
181700--181733	14	2.5	14	90	4	52	20	0	5	73	1.04
184626--184820	43	4.6	43	80	8	211	28	29	16	26	1.97
184630--184820	85	2.2	87	83	2	244	28	28	15	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185120--185157	20	1.9	20	88	0	58	65	5	7	21	1.38
186468--186534	33	2.0	33	85	0	89	16	40	19	23	1.91
186506--186591	40	2.2	40	86	0	127	18	31	18	31	1.95
186985--187041	28	2.0	30	86	6	82	49	0	0	50	1.00
190912--190976	30	2.2	30	91	0	103	56	13	4	24	1.56
195545--195683	30	4.6	30	80	11	133	38	3	26	31	1.74
195582--195683	30	3.4	30	86	1	141	35	2	28	33	1.72
195570--195688	61	2.0	59	85	6	159	34	3	27	34	1.74
196818--196866	24	2.0	24	88	0	71	38	2	10	48	1.48
198129--198245	58	2.0	58	96	0	216	11	28	23	35	1.91
198211--198860	49	13.2	49	74	9	473	18	24	17	38	1.92
198208--198860	98	6.6	98	83	3	731	18	24	17	38	1.92
198208--198860	296	2.2	294	84	3	848	18	24	17	38	1.92
198208--198860	147	4.4	147	76	7	576	18	24	17	38	1.92
204857--204957	30	3.4	29	82	10	91	38	2	25	32	1.71
204873--205197	59	5.5	58	83	7	379	37	2	24	35	1.68
204873--205197	29	11.0	29	83	5	361	37	2	24	35	1.68
205737--205944	104	2.0	104	95	0	371	33	24	11	31	1.91
206322--206372	10	5.1	10	92	0	75	45	1	1	50	1.24
206322--206372	6	8.5	6	91	0	75	45	1	1	50	1.24
206322--206372	4	12.8	4	89	0	75	45	1	1	50	1.24
209441--209545	52	2.0	52	92	0	174	41	11	25	20	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
218971--219195	111	2.0	111	86	1	317	28	18	18	35	1.94
235208--235232	6	4.2	6	100	0	50	48	0	36	16	1.46
235867--235952	4	21.2	4	72	11	68	67	0	29	3	1.07
235873--235919	17	2.8	17	80	6	60	68	0	29	2	1.02
235865--235952	20	4.6	19	79	12	99	67	0	29	3	1.07
239343--239479	45	3.0	44	84	4	175	21	21	25	31	1.98

Tables:   1   2

The End!