genome.fa.s15315.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015315.1 Kokia drynarioides strain JFW-HI SEQ_130360, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  547892

Tables:   1   2   

This is table  2  of  2  ( 230 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338449--338544	23	4.1	22	74	16	61	70	13	5	10	1.30
338422--338579	80	2.0	79	82	7	194	69	15	5	9	1.33
339100--339189	41	2.2	40	78	9	92	32	4	7	55	1.48
351073--351134	29	2.1	29	82	8	72	29	1	4	64	1.23
351092--351153	15	4.2	15	75	4	54	20	3	4	70	1.19
351184--351225	20	2.2	19	86	4	57	23	2	2	71	1.10
351184--351244	26	2.3	25	76	17	61	22	3	4	68	1.23
354051--354100	12	4.2	12	92	2	75	8	14	0	78	0.97
355272--355316	23	1.9	23	81	4	54	53	2	4	40	1.33
357442--357482	20	2.0	20	100	0	82	24	24	4	46	1.72
359837--359875	20	2.0	20	84	0	51	56	0	0	43	0.99
359970--360026	30	1.9	30	82	7	71	49	1	1	47	1.22
367287--367334	20	2.4	20	92	0	78	37	22	22	16	1.94
367380--367431	15	3.4	15	89	2	68	17	3	28	50	1.64
369626--369685	30	2.0	30	96	0	111	33	15	3	48	1.61
373008--373056	23	2.1	23	85	7	64	46	8	0	44	1.33
373202--373267	25	2.7	26	74	9	66	51	1	3	43	1.26
373306--373337	13	2.4	13	94	5	55	46	0	0	53	1.00
373702--373829	66	2.0	65	85	1	175	35	4	3	56	1.36
383752--383810	21	2.6	24	76	15	70	38	25	23	11	1.89
383931--384083	48	3.2	48	81	0	180	26	24	32	17	1.97
383931--384065	72	1.9	72	84	3	182	25	22	33	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
383931--384080	24	6.2	24	76	3	140	26	24	32	18	1.97
383952--384110	48	3.3	48	78	5	160	27	23	32	16	1.96
386882--386924	14	2.9	15	83	13	54	65	0	0	34	0.93
391989--392037	16	3.0	16	82	11	55	36	6	24	32	1.80
392008--392039	16	2.0	16	100	0	64	31	6	25	37	1.81
395594--395660	21	3.2	21	79	10	59	61	5	2	29	1.35
396055--396080	2	13.0	2	100	0	52	50	0	0	50	1.00
396935--397050	57	2.0	57	100	0	232	24	29	21	25	1.99
398646--398696	26	1.9	27	84	4	68	54	0	0	45	0.99
399929--400064	34	4.0	34	84	1	175	33	13	17	36	1.89
400163--400273	44	2.6	44	88	5	165	31	14	19	34	1.92
400205--400273	23	3.1	23	66	8	61	31	14	17	36	1.90
400184--400252	21	3.2	21	66	11	50	27	14	21	36	1.93
400318--400367	15	3.3	15	85	0	64	46	30	2	22	1.63
401727--401785	28	2.1	28	93	0	100	33	8	6	50	1.59
402982--403033	20	2.6	20	87	0	68	30	30	11	26	1.92
403233--403274	20	2.1	20	95	0	75	35	26	4	33	1.77
407576--407642	27	2.5	27	82	4	82	46	29	2	20	1.66
407589--407640	20	2.5	21	78	12	54	48	28	3	19	1.66
407653--407698	21	2.2	21	84	0	56	23	0	28	47	1.52
407643--407725	28	3.0	27	78	15	71	24	1	27	46	1.60
407685--407739	21	2.6	21	82	5	67	30	3	23	41	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412402--412451	2	25.0	2	100	0	100	50	0	0	50	1.00
412943--413002	19	3.3	19	75	13	63	60	3	1	35	1.23
412989--413027	16	2.3	18	82	13	55	61	2	5	30	1.31
412969--413047	27	3.0	26	78	9	70	62	2	3	31	1.27
413006--413071	27	2.4	27	83	14	75	65	3	3	28	1.23
413833--413896	16	3.8	16	76	10	65	25	4	1	68	1.17
413833--413897	17	3.8	17	75	18	64	24	4	1	69	1.16
413833--413896	8	7.8	8	72	19	51	25	4	1	68	1.17
413834--413929	34	2.7	36	82	6	115	25	4	2	68	1.18
413776--413925	9	16.4	9	67	16	60	24	3	4	68	1.24
414899--414949	22	2.3	22	83	6	68	33	3	0	62	1.13
420427--420453	6	4.5	6	100	0	54	18	0	33	48	1.49
421237--421296	33	1.9	32	83	10	79	60	1	8	30	1.36
421376--421412	18	2.2	18	85	9	51	40	0	2	56	1.13
425512--425536	6	4.2	6	100	0	50	36	48	0	16	1.46
433187--433214	12	2.3	12	100	0	56	25	25	28	21	1.99
439383--439412	7	4.3	7	100	0	60	43	0	43	13	1.43
439634--439662	2	14.5	2	100	0	58	51	0	0	48	1.00
441716--441757	22	1.9	22	90	0	66	16	0	30	52	1.44
447911--447946	18	2.0	18	94	0	63	52	0	38	8	1.32
455971--457007	520	2.0	520	92	0	1725	33	20	18	28	1.96
458379--458438	11	4.8	12	75	20	61	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458401--458474	9	7.9	9	72	24	64	47	1	0	51	1.09
458392--458479	27	3.1	28	85	8	133	50	1	0	48	1.08
463740--463829	44	2.0	44	85	4	119	37	10	3	48	1.53
465097--465123	2	13.5	2	100	0	54	0	51	0	48	1.00
466360--466400	2	20.5	2	100	0	82	48	0	0	51	1.00
467038--467071	2	17.0	2	100	0	68	50	0	0	50	1.00
468981--469055	29	2.6	29	85	4	98	34	14	21	29	1.93
469071--469490	87	4.8	87	72	13	226	35	4	24	36	1.74
469066--469554	29	16.8	29	70	16	150	35	3	25	35	1.73
469071--469288	29	7.4	29	75	12	155	35	2	22	39	1.69
469390--469532	59	2.4	60	80	10	136	37	0	26	34	1.62
470601--470658	24	2.4	25	83	8	68	34	0	1	63	1.04
470622--470658	13	3.0	13	80	11	51	29	0	2	67	1.04
470618--470658	20	2.2	18	91	8	64	31	0	2	65	1.05
473533--473863	37	8.9	37	87	1	439	12	19	31	37	1.88
473663--473732	21	3.6	21	67	25	62	8	20	34	37	1.83
481002--481028	11	2.5	11	100	0	54	11	0	0	88	0.50
482997--483062	30	2.2	30	94	0	114	37	25	13	22	1.91
483150--483223	30	2.4	31	88	2	105	50	17	12	20	1.78
484142--484213	30	2.4	31	86	6	94	20	13	18	47	1.82
488722--488780	17	3.6	17	85	14	81	40	5	0	54	1.23
488736--488796	31	1.9	31	87	9	88	42	3	0	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
488694--488814	58	2.1	58	79	3	127	47	3	0	49	1.18
488940--488987	10	4.8	10	77	7	53	47	2	0	50	1.12
489063--489089	13	2.1	13	100	0	54	40	7	0	51	1.30
489067--489111	15	3.1	15	87	6	58	48	2	0	48	1.13
489016--489113	49	1.9	49	82	12	117	47	5	1	45	1.31
493172--493203	16	2.0	16	93	0	55	43	34	3	18	1.66
494196--494232	2	18.5	2	88	0	56	51	2	0	45	1.15
494785--494816	2	16.0	2	93	0	55	3	0	46	50	1.17
500544--500605	20	3.1	19	83	6	61	17	20	19	41	1.90
501528--501621	47	2.0	47	100	0	188	29	17	21	31	1.96
510045--510085	12	3.2	13	86	10	57	0	14	0	85	0.60
510045--510094	22	2.3	22	85	0	64	2	12	2	84	0.80
511245--511273	13	2.1	14	93	6	51	34	0	6	58	1.25
516869--516894	6	4.3	6	100	0	52	0	15	15	69	1.20
519775--519829	22	2.5	22	74	14	58	60	7	1	30	1.35
520135--520194	30	2.0	31	81	15	72	60	10	5	25	1.49
523319--523353	17	2.0	18	88	5	54	28	0	2	68	1.04
523582--523609	3	9.3	3	100	0	56	64	0	0	35	0.94
525689--525717	2	14.5	2	100	0	58	51	0	0	48	1.00
535489--535515	4	6.8	4	100	0	54	51	22	0	25	1.48
542594--542620	3	9.0	3	100	0	54	33	33	0	33	1.58
543905--543931	2	13.5	2	100	0	54	48	0	51	0	1.00

Tables:   1   2

The End!