genome.fa.s15316.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015316.1 Kokia drynarioides strain JFW-HI SEQ_130361, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  577508

Tables:   1   2   

This is table  2  of  2  ( 233 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
389494--389616	43	2.9	43	80	6	135	28	23	17	30	1.97
392730--392807	40	1.9	41	81	2	95	28	23	8	39	1.84
406252--406476	30	7.4	30	77	11	167	35	23	3	38	1.72
406252--406476	62	3.7	59	77	10	199	35	23	3	38	1.72
410444--410480	18	2.1	17	90	5	56	62	0	0	37	0.96
410556--410586	15	2.1	15	100	0	62	87	6	0	6	0.68
411218--411361	40	3.7	40	79	9	170	25	15	28	31	1.95
411371--411535	50	3.3	50	84	1	206	21	24	19	34	1.96
422640--422664	2	12.5	2	100	0	50	52	0	0	48	1.00
422708--422821	30	3.8	30	90	3	167	36	3	23	35	1.72
422708--422821	60	1.9	61	90	1	185	36	3	23	35	1.72
423995--424038	13	3.6	12	80	14	54	63	0	2	34	1.07
424093--424132	20	2.0	20	86	13	57	77	0	0	22	0.77
424666--424732	28	2.4	28	89	0	98	26	19	22	31	1.98
424666--424754	28	3.2	28	77	3	90	26	20	21	31	1.98
425463--425493	14	2.3	13	94	5	53	25	0	22	51	1.48
426286--426315	14	2.1	14	93	0	51	66	0	0	33	0.92
426353--426390	18	2.1	19	90	5	60	42	0	0	57	0.98
426928--426972	4	12.2	4	84	13	53	57	0	42	0	0.98
426931--426972	7	5.9	7	91	2	66	57	0	42	0	0.99
427122--427156	18	1.9	18	94	0	61	25	0	14	60	1.35
431403--431686	36	7.9	35	72	10	146	26	11	15	46	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431423--431667	36	6.8	35	74	9	161	25	11	15	46	1.80
431396--431658	73	3.6	73	77	3	228	26	11	15	45	1.81
432038--432319	60	4.6	60	79	8	248	29	15	15	39	1.89
431999--432320	60	5.3	60	75	10	237	28	15	16	39	1.90
432024--432319	123	2.4	123	83	7	365	29	15	15	39	1.89
431999--432376	123	3.1	123	81	7	326	29	15	15	39	1.89
433201--433288	30	2.9	30	84	3	106	60	5	7	26	1.47
433800--433984	61	3.0	62	82	4	239	41	14	17	26	1.88
433816--434106	61	4.8	61	78	9	199	39	16	17	27	1.91
433893--434299	59	6.9	58	75	11	318	36	15	19	28	1.92
433893--434293	116	3.4	112	76	12	346	36	15	19	29	1.92
441599--441637	2	20.0	2	94	5	71	0	48	0	51	1.00
448211--448280	29	2.5	28	77	15	81	37	27	14	21	1.92
448770--448961	96	2.0	96	85	8	257	36	14	19	29	1.91
449220--449320	29	3.5	29	70	11	91	31	6	28	32	1.84
449220--449323	28	3.6	28	69	15	86	31	6	29	31	1.83
449302--449746	30	15.1	29	74	13	331	33	2	28	35	1.72
449210--449342	58	2.3	58	81	6	153	33	5	28	33	1.80
449305--449746	59	7.5	56	78	10	343	33	2	28	35	1.72
451512--451544	17	1.9	17	93	0	57	57	3	0	39	1.14
456119--456189	34	2.1	34	100	0	142	38	19	15	26	1.92
457446--457472	2	13.5	2	100	0	54	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466165--466211	6	8.2	6	86	13	64	36	0	0	63	0.94
466165--466232	28	2.5	28	80	17	72	35	0	0	64	0.94
474968--475001	18	1.9	18	88	5	52	64	5	0	29	1.17
476042--476112	31	2.3	32	90	4	110	42	9	9	38	1.71
478430--478477	16	2.9	16	71	3	51	27	0	2	70	0.98
478947--479026	30	2.6	32	86	4	101	42	11	17	28	1.84
485480--485530	21	2.4	21	76	0	57	31	13	19	35	1.91
491971--492026	26	2.2	26	90	6	87	32	21	19	26	1.97
495705--495731	13	2.1	13	100	0	54	25	22	7	44	1.79
498504--498649	52	2.8	52	86	4	213	28	14	24	32	1.94
500546--500607	2	31.0	2	95	0	106	1	0	46	51	1.10
501059--501142	38	2.2	39	82	6	118	30	22	20	26	1.98
504150--504234	38	2.2	38	85	4	118	29	24	21	24	1.99
505083--505127	20	2.2	20	96	0	81	35	8	15	40	1.79
509007--509031	5	5.0	5	100	0	50	20	40	20	20	1.92
510579--510828	123	2.0	123	100	0	500	28	17	10	44	1.81
512340--512364	13	1.9	13	100	0	50	44	24	0	32	1.54
516933--517018	7	12.3	7	100	0	172	56	13	29	0	1.38
525121--526142	479	2.1	479	96	0	1857	25	10	19	44	1.83
526622--526693	36	2.0	36	97	0	135	37	36	2	23	1.70
529063--529157	42	2.3	42	94	1	165	48	18	17	14	1.81
534457--534539	7	11.6	7	71	14	62	30	22	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
534457--534539	21	3.9	21	80	9	96	30	22	21	25	1.99
534485--534539	23	2.5	23	88	5	87	30	23	21	23	1.99
537547--537598	27	1.9	27	84	7	70	40	1	0	57	1.10
539875--540322	227	2.0	227	96	0	833	27	20	22	29	1.98
542542--542584	21	2.2	20	83	8	52	32	0	2	65	1.06
544031--544061	16	2.0	15	93	6	53	51	0	0	48	1.00
545258--545297	18	2.2	19	86	4	55	27	7	22	42	1.80
546683--546885	102	2.0	104	90	4	322	36	5	12	45	1.66
549870--550323	229	2.0	226	87	2	649	38	12	18	30	1.88
551254--551323	28	2.5	29	80	15	76	35	8	22	32	1.85
551246--551326	27	2.9	29	78	15	91	33	8	27	30	1.87
551281--551585	29	10.5	28	71	16	178	37	5	23	33	1.78
551281--551576	59	5.1	59	78	7	302	37	5	23	33	1.77
551554--551609	29	2.0	28	85	3	76	28	10	28	32	1.90
553330--553421	17	5.3	17	86	2	121	57	2	1	39	1.18
553329--553415	6	14.8	6	68	13	56	55	2	1	41	1.20
553762--554459	208	3.3	208	85	2	943	20	22	18	36	1.93
554301--554642	172	2.0	172	91	1	560	21	22	18	37	1.94
554094--554850	381	2.0	380	89	1	1149	22	22	18	36	1.95
554446--554992	209	2.6	209	90	0	835	21	23	19	35	1.96
560096--561025	208	4.5	208	87	1	1283	22	21	18	37	1.94
560953--561068	48	2.4	48	83	7	146	21	23	15	39	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
560828--561196	171	2.2	171	87	0	522	20	21	18	38	1.93
560622--561773	379	3.1	374	82	5	1466	21	22	18	37	1.94
561158--561518	161	2.2	160	82	3	438	22	22	18	37	1.94
561343--562599	208	6.0	208	87	1	1599	22	22	18	36	1.95
565256--567228	208	9.5	209	88	2	2619	22	22	18	36	1.95
565256--567228	417	4.7	417	87	1	2683	22	22	18	36	1.95
568720--568975	39	6.6	39	70	7	162	30	21	26	21	1.98
568720--568936	78	2.8	77	85	4	292	28	20	28	22	1.99
568757--569060	117	2.6	117	76	4	317	29	19	27	23	1.98
568791--569063	117	2.3	117	80	0	321	30	20	26	23	1.99
569081--569185	41	2.6	41	87	1	149	38	15	16	30	1.89
569418--570062	50	13.1	49	76	12	360	18	31	16	33	1.93
569423--570062	98	6.5	97	76	10	329	18	31	16	33	1.93
569416--570199	148	5.3	148	79	6	608	17	30	17	34	1.93
569438--570237	99	8.1	100	74	9	536	17	30	17	34	1.93
569596--570251	247	2.7	246	77	5	651	17	30	16	35	1.93
576384--576440	29	1.9	30	85	3	80	40	5	15	38	1.70
576389--576463	30	2.6	29	79	10	73	38	2	20	38	1.66
576475--576669	29	6.7	29	79	7	191	35	1	26	35	1.66
576439--576757	56	5.6	56	75	9	227	34	3	25	36	1.73
576475--576682	114	1.8	116	87	4	314	35	2	27	34	1.70
576475--576757	114	2.5	113	80	8	288	36	3	24	36	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576598--576746	30	5.2	28	74	12	115	32	4	23	38	1.76
576692--576760	30	2.3	30	85	7	88	40	2	18	37	1.66
577479--577508	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2

The End!