Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015317.1 Kokia drynarioides strain JFW-HI SEQ_130362, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  666550

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461431--461490
26
2.3
26
82
2
68
38
15
6
40
1.73
461651--461697
6
7.8
6
90
0
58
17
25
0
57
1.40
461645--461695
12
4.2
12
84
0
66
15
21
1
60
1.44
461645--461703
18
3.3
18
78
0
64
13
23
3
59
1.50
465620--465658
19
2.1
19
85
0
51
56
5
0
38
1.22
465980--466013
17
1.9
18
88
5
52
17
8
23
50
1.74
487291--487338
24
2.0
24
84
12
62
16
8
4
70
1.27
489554--489591
17
2.2
17
90
0
58
23
13
10
52
1.71
497963--498022
29
2.1
28
85
8
86
28
18
6
46
1.74
497971--498028
29
2.0
29
100
0
116
27
17
10
44
1.81
502507--502554
19
2.5
20
75
21
50
45
0
0
54
0.99
503261--503317
26
2.2
26
78
12
73
35
3
0
61
1.13
506726--506750
12
2.1
12
100
0
50
36
8
16
40
1.77
508763--508814
26
1.9
28
88
7
81
75
3
13
7
1.17
531746--531778
14
2.3
15
89
5
50
39
3
0
57
1.14
540282--540322
21
2.0
21
90
9
66
46
14
12
26
1.80
542823--542867
23
2.0
23
86
8
65
44
2
0
53
1.13
542835--542887
20
2.6
20
84
3
61
37
3
1
56
1.28
542836--542873
17
2.2
18
85
4
51
42
2
0
55
1.14
544506--544984
205
2.3
206
92
2
777
21
21
20
36
1.96
555573--555919
29
11.8
28
78
10
277
32
2
29
34
1.72
555540--555917
59
6.4
57
82
8
420
32
2
29
35
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
566858--567204
29
11.8
28
78
10
277
32
2
29
34
1.72
566825--567202
59
6.4
57
82
8
420
32
2
29
35
1.72
568206--568255
22
2.2
24
85
7
68
44
2
0
54
1.11
568384--568609
29
7.7
29
81
8
280
31
4
30
34
1.77
568384--568609
58
3.9
58
90
5
348
31
4
30
34
1.77
568384--568609
117
1.9
118
90
4
368
31
4
30
34
1.77
569618--569667
22
2.2
24
89
7
77
42
2
0
56
1.11
570395--570486
17
5.2
17
85
8
114
54
2
2
41
1.25
570395--570477
6
14.2
6
73
14
75
54
2
2
40
1.27
570409--570486
36
2.2
35
93
2
129
56
1
2
39
1.21
573467--573545
29
2.7
29
77
13
72
37
2
1
58
1.20
583480--583540
30
2.0
30
93
0
104
18
8
32
40
1.80
593962--594014
9
6.8
9
71
28
50
49
0
0
50
1.00
593971--594012
20
2.0
22
90
9
70
52
0
0
47
1.00
593937--594009
29
2.4
31
95
4
132
46
0
0
53
1.00
593962--594018
20
3.0
20
74
23
59
47
0
0
52
1.00
621244--621282
15
2.5
16
79
4
53
33
0
2
64
1.08
621270--621351
29
2.6
30
81
12
78
45
2
1
51
1.22
631983--632029
2
24.5
2
91
8
80
51
0
0
48
1.00
632615--632655
17
2.3
19
80
16
52
63
0
4
31
1.15
637643--637680
19
2.0
20
85
15
53
65
0
2
31
1.06
637928--637970
14
3.0
14
75
3
50
18
0
11
69
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
639304--639330
12
2.2
12
100
0
54
0
33
7
59
1.25
641825--641859
17
2.0
18
88
5
54
62
0
31
5
1.18
645838--645872
3
11.7
3
100
0
70
31
0
0
68
0.90
646022--646087
34
1.9
34
87
6
98
46
18
10
24
1.80

Tables:   1   2

The End!