genome.fa.s15319.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015319.1 Kokia drynarioides strain JFW-HI SEQ_130365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  446018

Tables:   1   2   

This is table  1  of  2  ( 168 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4631--4708	31	2.5	31	85	4	95	53	2	3	39	1.33
5610--5746	31	4.5	31	78	13	160	26	14	10	48	1.77
5610--5801	89	2.1	90	86	6	266	25	15	11	46	1.80
5982--6064	31	2.6	31	83	7	96	43	15	18	22	1.87
6647--6708	30	2.1	30	96	0	115	22	1	16	59	1.45
13054--13140	41	2.1	41	91	0	147	31	28	5	34	1.81
15950--16006	29	2.0	28	89	3	87	33	3	12	50	1.57
29587--29632	23	2.0	23	95	0	83	41	30	15	13	1.85
29593--29720	23	5.7	22	83	7	89	42	24	21	10	1.85
29655--29729	23	3.3	22	92	1	114	49	18	22	9	1.76
35539--35611	26	2.8	26	93	2	119	43	21	24	9	1.82
35599--35642	23	2.0	22	95	4	79	36	29	20	13	1.91
35655--35714	23	2.6	23	82	10	77	46	20	21	11	1.82
37941--37983	21	2.0	21	81	0	50	60	2	0	37	1.10
38865--38905	15	2.7	15	88	3	55	43	0	0	56	0.99
38854--38907	19	2.7	19	78	16	56	40	0	0	59	0.98
50072--50104	17	1.9	18	88	11	52	42	12	0	45	1.41
53684--53721	6	6.3	6	96	0	67	2	31	50	15	1.58
70765--70817	9	6.8	9	71	28	50	50	0	0	49	1.00
70770--70826	29	2.0	27	93	6	96	52	0	0	47	1.00
70761--70817	20	3.0	20	74	23	59	52	0	0	47	1.00
72283--72327	22	2.0	22	86	0	63	31	15	2	51	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75983--76024	15	2.9	14	82	10	57	50	2	2	45	1.27
77056--77140	14	5.8	15	66	19	54	52	1	0	45	1.08
77121--77206	24	3.6	24	79	14	106	60	0	1	38	1.04
77056--77179	59	2.1	57	78	14	135	54	0	0	44	1.11
77101--77207	48	2.2	49	88	9	157	56	0	0	42	1.05
78920--78959	20	2.0	20	85	5	53	75	0	0	25	0.81
78926--78955	14	2.1	14	93	0	51	73	0	0	26	0.84
93392--93443	22	2.4	22	96	0	95	46	38	0	15	1.46
93518--93545	14	2.0	14	100	0	56	35	28	7	28	1.84
95176--95244	30	2.3	29	79	18	72	31	1	1	65	1.11
103079--103134	2	28.0	2	92	0	94	53	0	46	0	1.00
132446--132492	25	2.0	25	87	8	71	70	2	2	25	1.10
133566--133644	29	2.6	29	82	9	79	35	1	12	50	1.48
136848--137074	86	2.6	86	85	1	303	30	26	17	25	1.97
136848--137046	43	4.6	43	89	0	290	29	26	19	25	1.99
137373--137410	20	1.9	20	88	0	58	63	5	10	21	1.46
138588--138620	2	16.5	2	100	0	66	51	0	0	48	1.00
139524--139567	22	2.0	23	90	4	72	50	15	11	22	1.76
140325--140511	41	4.6	41	87	1	232	19	28	23	28	1.98
140865--140922	28	2.0	29	90	3	91	39	17	18	24	1.92
142036--142077	20	2.0	21	90	4	68	19	4	9	66	1.38
142889--142938	17	3.1	16	73	18	50	46	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
156256--156299	18	2.4	19	81	11	56	50	2	0	47	1.13
162364--162435	24	3.0	24	72	22	62	58	0	2	38	1.13
171326--171386	6	10.7	6	77	10	65	55	1	1	40	1.19
171326--171392	11	5.9	11	76	11	64	56	1	1	40	1.17
171326--171392	17	3.9	17	86	3	91	56	1	1	40	1.17
171319--171380	28	2.2	28	88	0	88	54	1	3	40	1.26
172643--172699	25	2.3	24	82	11	71	73	5	8	12	1.23
182599--182698	21	4.9	21	80	14	102	69	0	0	31	0.89
182598--182683	39	2.2	38	87	2	127	68	0	0	31	0.90
184791--184904	56	2.0	56	96	0	210	28	23	9	38	1.86
188892--188931	17	2.4	17	82	0	53	20	15	12	52	1.74
191394--191436	21	2.0	21	95	0	77	44	11	4	39	1.62
193681--193717	8	4.3	9	86	6	51	81	0	0	18	0.70
193681--193717	19	2.1	19	90	10	60	81	0	0	18	0.70
193833--193867	2	17.5	2	100	0	70	51	0	48	0	1.00
203237--203272	17	2.1	17	90	10	56	36	0	11	52	1.37
205673--205703	14	2.2	14	100	0	62	6	0	25	67	1.14
209368--209569	90	2.3	86	82	8	239	38	19	8	33	1.82
209619--209700	19	4.3	19	84	4	85	65	1	4	28	1.20
209606--209775	28	5.9	27	72	13	119	63	1	4	30	1.25
209606--209736	56	2.3	57	82	5	158	63	0	3	32	1.18
209630--209775	56	2.5	57	85	5	179	65	2	4	28	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
209651--209784	57	2.3	55	82	10	155	62	2	5	29	1.31
209614--209801	10	19.5	10	66	16	78	63	2	4	29	1.27
210071--210123	19	2.7	20	80	11	65	33	3	1	60	1.26
210155--210361	92	2.3	92	88	2	301	33	9	20	36	1.85
214043--214153	58	1.9	59	81	9	138	59	9	3	27	1.46
219597--219641	18	2.5	18	100	0	90	0	33	0	66	0.92
219585--219641	3	19.0	3	82	13	73	0	35	0	64	0.93
226844--227002	45	3.5	45	83	1	203	21	15	15	48	1.81
226839--227048	45	4.7	45	79	10	168	21	15	15	47	1.82
226840--227047	90	2.3	90	82	3	240	21	15	14	47	1.82
228888--228930	17	2.5	17	80	0	50	34	2	2	60	1.22
238446--238510	23	2.8	24	92	4	114	24	24	23	27	2.00
243452--243699	52	4.8	52	85	4	297	27	14	22	34	1.94
244613--244642	15	2.1	14	93	6	51	56	0	16	26	1.40
250178--250372	52	3.8	52	84	2	223	28	13	24	34	1.93
252856--252893	13	2.9	13	92	0	58	2	28	2	65	1.19
257777--258040	51	5.2	52	77	9	192	29	13	21	35	1.92
257770--258086	103	3.1	101	79	8	304	29	13	21	35	1.92
261582--261766	52	3.6	51	83	6	221	24	12	23	38	1.90
263482--263521	21	1.9	21	84	0	53	37	5	12	45	1.64
266517--266649	51	2.6	52	84	3	162	24	14	24	36	1.93
266523--266648	52	2.5	51	85	3	155	25	13	23	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273051--273291	52	4.6	52	85	1	331	26	14	23	35	1.93
275803--275887	42	2.0	42	97	0	161	44	2	10	42	1.51
276775--276949	87	2.0	87	100	0	350	30	16	29	22	1.96
280390--280428	16	2.5	15	76	8	51	33	0	2	64	1.08
283443--283481	18	2.2	18	90	0	60	28	12	10	48	1.74
290214--290278	32	2.0	32	100	0	130	18	15	21	44	1.86
296515--296559	23	1.9	22	86	13	63	22	8	0	68	1.16
297849--297881	15	2.2	15	89	10	50	66	0	0	33	0.92
308558--308646	28	3.2	28	79	3	90	21	26	17	33	1.96
308683--308731	18	2.7	18	77	0	53	28	20	24	26	1.99
310534--310584	22	2.3	22	83	10	59	49	3	7	39	1.51
310541--310584	22	1.9	24	86	9	65	45	4	9	40	1.56
312050--312077	14	2.0	14	100	0	56	42	7	21	28	1.79
319567--319606	21	1.9	21	85	10	55	67	5	27	0	1.11
319576--319619	19	2.3	19	84	7	54	68	4	25	2	1.20
319716--319769	17	3.1	17	86	2	63	18	12	11	57	1.64
326745--326790	23	2.0	23	100	0	92	21	13	17	47	1.81
329205--329255	22	2.3	23	86	3	68	50	1	3	43	1.31
332736--332788	27	2.0	27	84	0	70	37	24	20	16	1.93
349416--349536	28	4.2	28	80	3	134	40	23	10	25	1.87
350166--350213	5	9.4	5	81	2	51	18	52	20	8	1.71
350166--350213	15	3.1	15	81	3	60	18	52	20	8	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350464--350529	12	5.3	12	79	13	53	69	16	6	7	1.32
350555--350638	44	1.9	43	90	2	132	67	22	4	4	1.28
350555--350642	22	4.0	23	76	8	94	68	22	4	4	1.27
355518--355543	12	2.2	12	100	0	52	84	0	0	15	0.62
360291--360343	26	2.0	26	85	0	70	45	3	7	43	1.50
367361--367571	27	7.7	27	75	8	160	30	11	23	34	1.90
367374--367572	82	2.4	81	81	7	224	29	12	23	35	1.91
370271--370314	22	2.0	22	95	4	81	45	22	20	11	1.83
375623--375662	21	1.9	21	89	0	62	85	0	5	10	0.75
375633--375670	13	3.0	13	84	7	51	84	0	2	13	0.73

Tables:   1   2