Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015319.1 Kokia drynarioides strain JFW-HI SEQ_130365, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  446018

Tables:   1   2   

This is table  2  of  2  ( 168 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
377392--377423
16
2.1
16
88
11
50
53
3
3
40
1.33
382232--382310
30
2.6
30
81
2
104
40
8
7
43
1.64
382232--382326
30
3.1
30
76
7
102
41
8
6
44
1.60
392729--392766
3
12.7
3
100
0
76
68
31
0
0
0.90
397814--398218
101
4.1
100
78
7
394
36
17
19
27
1.94
397770--398070
51
6.0
51
73
13
194
33
17
19
28
1.95
397829--398086
50
5.1
49
71
11
182
36
16
18
27
1.93
406645--406732
44
2.0
46
84
4
117
52
17
21
9
1.72
407854--408012
85
1.9
85
85
0
219
38
15
22
23
1.92
407752--408262
208
2.5
205
86
4
687
38
18
19
23
1.93
408187--408507
107
2.9
107
80
7
313
37
17
20
24
1.94
408294--408560
118
2.3
118
84
2
340
37
16
22
24
1.93
408490--408645
85
1.8
85
85
0
222
39
16
21
22
1.92
408732--408802
37
1.9
37
82
5
90
38
21
19
21
1.94
408841--408934
48
2.0
48
86
0
134
40
14
20
24
1.90
408614--408925
159
2.0
155
79
5
340
38
17
19
23
1.93
408769--409171
123
3.3
122
84
2
504
40
18
19
21
1.91
408369--409586
208
6.0
208
72
9
786
39
17
20
22
1.92
409294--409464
85
2.0
85
85
2
227
38
15
21
24
1.93
409343--409416
37
2.0
37
86
0
103
36
16
20
27
1.93
410391--410421
4
7.8
4
92
0
53
22
0
0
77
0.77
411335--411391
30
1.9
30
88
0
87
42
22
3
31
1.71
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
411373--411450
29
2.6
30
84
8
106
30
21
6
41
1.78
411394--411529
29
4.7
29
73
13
100
33
22
5
38
1.76
413262--413292
15
2.1
15
100
0
62
45
12
6
35
1.68
413265--413298
15
2.3
15
89
0
50
55
11
2
29
1.50
413945--414815
435
2.0
435
98
0
1679
35
15
13
34
1.87
420142--420192
26
2.0
26
88
0
75
21
9
5
62
1.47
427793--427837
19
2.4
19
81
7
56
37
0
4
57
1.19
428601--428630
16
1.9
16
93
6
53
16
13
0
70
1.18
428596--428656
22
2.8
22
87
7
72
14
11
1
72
1.20
428610--428656
21
2.2
22
92
3
78
14
8
2
74
1.15
429963--430013
21
2.4
21
93
0
84
45
13
13
27
1.82
431191--431230
8
4.8
8
84
9
53
15
2
0
82
0.77
431558--431596
20
1.9
20
84
5
51
25
5
15
53
1.62
431809--432045
130
1.8
130
83
6
311
37
13
23
26
1.91
432732--432776
19
2.4
19
81
7
56
35
0
4
60
1.17
434131--434176
21
2.2
21
92
0
74
17
4
2
76
1.06
434118--434177
30
2.0
31
83
9
79
16
6
1
75
1.10
438143--438173
8
3.9
8
95
0
53
38
0
0
61
0.96
438305--438517
109
1.9
110
85
2
295
31
8
15
44
1.77
442412--442468
15
4.0
14
82
15
64
82
1
15
0
0.75
442422--442467
21
2.1
22
96
4
85
84
0
15
0
0.62
442422--442467
15
3.1
15
90
3
67
84
0
15
0
0.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
443552--444381
42
20.4
42
81
7
917
30
27
16
25
1.97
443552--444381
81
10.2
80
84
6
983
30
27
16
25
1.97
443997--444709
45
16.7
45
79
11
409
31
27
16
24
1.96
444365--444712
45
7.7
45
85
3
425
33
26
15
24
1.95

Tables:   1   2

The End!