genome.fa.s15324.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015324.1 Kokia drynarioides strain JFW-HI SEQ_130370, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  507159

Tables:   1   2   

This is table  2  of  2  ( 210 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333102--333245	73	2.0	73	90	0	225	34	9	8	47	1.66
334041--334083	20	2.2	20	83	8	52	55	2	2	39	1.25
336274--336303	6	5.0	6	91	0	51	33	53	0	13	1.40
336392--336551	39	4.4	38	74	20	162	26	50	11	11	1.73
336448--336505	27	2.1	27	93	0	98	22	51	12	13	1.74
336409--336546	66	2.1	66	93	0	231	24	50	11	13	1.74
350191--350242	17	3.1	17	75	5	52	19	1	5	73	1.14
351598--351647	21	2.4	21	100	0	100	18	14	20	48	1.82
359429--359470	5	8.8	5	79	10	52	38	0	0	61	0.96
361896--362057	82	2.0	83	80	7	186	43	3	6	46	1.46
363292--363324	16	2.0	17	88	5	50	45	9	0	45	1.35
366252--366298	21	2.2	21	85	7	60	53	0	4	42	1.20
366293--366356	27	2.4	27	84	5	76	51	0	3	45	1.17
380658--380693	2	18.0	2	100	0	72	50	0	50	0	1.00
381851--381880	15	1.9	16	93	6	53	70	0	0	30	0.88
382045--382087	22	1.9	23	85	4	61	23	13	6	55	1.62
395223--395311	30	3.0	29	65	11	72	28	23	2	46	1.64
396591--397034	220	2.0	222	92	1	748	38	14	9	37	1.79
397129--397158	14	2.1	15	93	6	53	20	13	0	66	1.24
403435--403692	129	2.0	126	83	8	317	26	18	28	25	1.98
408492--408525	15	2.3	15	89	0	50	20	0	5	73	1.04
411692--411736	20	2.2	20	84	0	54	31	17	2	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412448--412475	3	9.3	3	100	0	56	32	0	0	67	0.91
417612--417982	86	4.3	86	89	3	554	40	5	4	49	1.46
417612--417982	171	2.2	170	89	2	566	40	5	4	49	1.46
420385--420476	30	3.1	30	87	0	103	27	7	3	61	1.38
420426--420483	17	3.6	18	72	27	67	22	12	3	62	1.45
420427--420489	30	2.1	30	96	0	117	19	11	3	66	1.36
421352--421625	61	4.5	61	82	5	306	36	18	18	25	1.94
421313--421625	120	2.6	119	82	8	377	38	18	17	25	1.93
422541--422634	31	3.0	30	87	6	134	43	9	10	36	1.72
423339--423396	31	2.0	30	86	10	84	51	3	5	39	1.41
424012--424062	20	2.7	20	82	8	63	64	1	1	31	1.15
424035--424089	26	2.1	26	83	12	69	61	0	3	34	1.13
424023--424196	20	8.9	20	70	12	110	58	2	6	32	1.36
424013--424173	21	8.1	20	73	11	100	60	1	6	31	1.32
424069--424197	62	2.1	60	80	8	145	58	2	6	32	1.38
431918--431961	21	2.0	22	82	4	54	13	4	6	75	1.17
431918--431961	22	2.0	22	82	8	54	13	4	6	75	1.17
431991--432048	24	2.4	24	94	0	98	39	1	3	55	1.27
435281--435774	59	8.4	59	79	8	262	34	4	26	34	1.76
435357--435774	88	4.7	87	79	8	260	34	4	26	35	1.75
435281--435783	29	17.1	29	75	12	352	34	4	27	34	1.77
435431--435783	59	6.0	58	81	7	340	34	3	27	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
435437--435784	29	11.8	29	81	8	355	34	3	26	35	1.74
437411--437443	15	2.2	15	94	0	57	6	18	48	27	1.71
437621--437730	17	6.4	17	86	7	150	54	2	0	41	1.21
437621--437730	35	3.2	34	88	5	150	54	2	0	41	1.21
437621--437730	52	2.1	52	91	0	175	54	2	0	41	1.21
437621--437698	6	13.5	6	70	17	58	52	1	1	44	1.17
440549--440605	25	2.4	24	75	18	66	33	1	8	56	1.41
441248--441336	39	2.3	39	82	9	101	35	2	6	55	1.39
441403--441453	17	2.9	17	85	5	66	58	1	0	39	1.09
441409--441453	18	2.6	17	86	6	63	60	2	0	37	1.09
446136--446205	10	7.7	9	72	13	54	68	1	1	28	1.06
446163--446230	26	2.4	27	83	9	75	69	0	1	29	0.98
446189--446231	13	3.2	13	80	12	52	74	0	0	25	0.82
448349--448438	45	2.0	45	100	0	180	37	15	11	35	1.83
454542--454652	43	2.6	43	88	0	168	19	18	34	27	1.95
457859--457903	22	2.0	22	83	8	56	57	0	0	42	0.98
463210--463505	80	3.7	80	85	3	350	31	26	20	21	1.98
464716--464755	20	2.0	21	90	5	64	57	2	5	35	1.34
466225--466274	23	2.1	24	82	10	59	56	8	2	34	1.40
467174--467204	15	2.1	14	94	5	53	51	0	0	48	1.00
474389--474427	19	2.1	19	95	0	69	41	0	28	30	1.57
478097--478139	3	14.3	3	100	0	86	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
482627--482706	41	2.0	41	84	0	106	22	3	10	63	1.41
483221--483267	22	2.1	22	88	7	69	25	23	0	51	1.49
483410--483470	30	2.0	30	100	0	122	54	9	6	29	1.59
484303--484341	21	1.9	20	84	5	51	64	0	2	33	1.08
485406--485444	16	2.4	16	95	0	69	30	33	5	30	1.79
485566--485663	45	2.2	46	81	7	112	30	18	7	43	1.77
486103--486177	35	2.2	35	79	9	84	25	2	2	69	1.15
489878--489927	24	2.1	23	82	10	57	34	6	2	58	1.34
489905--490071	58	2.9	58	83	5	221	43	1	1	53	1.18
492566--492604	20	2.0	18	85	14	51	25	2	5	66	1.25
496606--496663	21	2.9	22	75	19	72	34	0	5	60	1.19
496617--496656	18	2.2	18	86	8	55	35	0	5	60	1.19
496734--496764	9	3.4	9	90	0	53	29	9	12	48	1.73
499908--499938	16	1.9	16	100	0	62	54	0	12	32	1.38
500316--500354	2	19.0	2	89	5	60	48	2	2	46	1.29
502291--502351	17	3.6	18	86	8	83	39	1	1	57	1.18
502309--502357	11	4.8	11	76	19	52	40	0	2	57	1.10
502289--502393	46	2.3	46	88	0	147	41	2	1	53	1.26
502309--502376	29	2.4	28	87	5	91	41	2	1	54	1.24
502291--502361	17	4.1	17	84	12	65	39	1	2	56	1.23
502291--502359	35	2.0	35	85	5	95	40	1	2	55	1.24
503040--503068	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504235--504444	29	7.1	30	70	14	134	35	28	4	31	1.77
504237--504341	31	3.5	29	81	5	129	36	26	2	34	1.72

Tables:   1   2

The End!