genome.fa.s15325.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015325.1 Kokia drynarioides strain JFW-HI SEQ_130371, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  591955

Tables:   1   2   3   

This is table  2  of  3  ( 243 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
255522--255551	13	2.2	14	94	5	53	33	6	20	40	1.78
261233--261277	23	2.0	22	91	4	72	24	2	4	68	1.19
272124--272202	41	2.0	38	85	7	104	58	13	1	26	1.44
272607--272644	16	2.4	16	86	8	51	57	13	7	21	1.60
277873--277910	19	2.0	20	84	5	51	31	7	5	55	1.51
278255--278299	17	2.6	18	82	3	56	31	4	4	60	1.37
278865--278942	29	2.5	31	81	10	97	51	14	1	33	1.50
279542--279579	2	19.5	2	94	5	69	50	0	0	50	1.00
282371--282398	2	14.0	2	100	0	56	0	50	0	50	1.00
282688--282732	14	3.2	14	80	0	54	35	2	17	44	1.62
283302--283359	30	2.0	30	89	3	91	37	8	8	44	1.66
295007--295247	75	3.3	75	84	1	308	28	18	20	32	1.96
312520--312547	11	2.5	11	100	0	56	39	17	7	35	1.78
314088--314130	2	21.5	2	100	0	86	0	48	0	51	1.00
315426--315474	21	2.3	21	86	6	64	24	14	2	59	1.46
315563--315606	22	2.0	22	90	0	70	40	9	15	34	1.79
315548--315595	22	2.2	23	85	7	64	41	8	12	37	1.73
315608--315633	11	2.4	11	100	0	52	0	7	0	92	0.39
316523--316572	3	16.7	3	100	0	100	68	0	0	32	0.90
317779--317811	17	1.9	17	93	0	57	21	3	0	75	0.93
319881--320086	104	2.0	103	85	8	276	36	19	14	29	1.91
320443--320499	30	1.9	30	88	0	87	40	3	24	31	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325607--325654	21	2.3	21	85	7	62	35	20	16	27	1.94
334503--334530	12	2.3	12	100	0	56	14	0	0	85	0.59
334881--334924	21	2.0	22	86	4	63	72	0	25	2	0.96
334872--334928	11	4.9	11	77	12	51	71	0	24	3	1.01
334887--334944	22	2.6	22	83	5	64	68	0	29	1	0.99
335308--335350	21	2.1	21	91	4	70	27	2	13	55	1.51
335282--335493	111	2.0	101	100	0	334	30	2	11	50	1.52
335419--335461	21	2.1	21	91	4	70	27	2	13	55	1.51
336302--336345	23	2.0	23	86	4	63	40	18	22	18	1.91
345121--345168	24	2.0	24	100	0	96	29	29	12	29	1.93
349546--349609	23	2.5	26	78	19	80	48	15	3	32	1.61
350008--350119	36	3.1	36	88	0	170	41	22	6	30	1.78
351533--351739	30	6.9	30	78	7	215	39	24	4	31	1.76
351528--351739	60	3.5	60	85	3	284	38	25	4	31	1.76
351530--351739	90	2.3	90	86	3	307	39	24	4	31	1.76
351775--351811	3	12.3	3	94	0	65	35	0	0	64	0.94
357039--357355	158	2.0	158	98	0	616	33	12	30	23	1.92
363490--363523	12	3.0	12	87	12	54	0	23	0	76	0.79
364255--364301	21	2.2	21	85	7	60	0	29	12	57	1.36
370894--370924	15	2.1	14	94	5	53	19	29	6	45	1.75
374776--374884	50	2.2	50	93	0	182	33	18	26	22	1.97
374795--374973	50	3.6	50	80	6	184	37	15	22	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375085--375257	39	4.4	38	74	9	177	29	26	17	26	1.97
376261--376379	30	4.0	30	84	4	132	35	23	5	35	1.79
376257--376384	60	2.1	60	82	2	159	35	23	5	35	1.78
381301--381325	9	2.8	9	100	0	50	56	12	20	12	1.67
383017--383050	17	2.0	17	94	0	59	32	17	2	47	1.63
384174--384217	13	3.2	13	87	9	61	40	4	0	54	1.21
390420--390459	18	2.3	18	86	4	55	35	17	2	45	1.62
391556--391599	13	3.2	13	87	9	61	40	4	0	54	1.21
399241--399349	51	2.1	52	88	5	159	24	20	9	45	1.80
401916--402004	44	2.0	44	100	0	178	31	21	17	29	1.96
414244--414269	7	3.7	7	100	0	52	15	53	0	30	1.42
415545--415577	15	2.2	15	89	10	50	33	24	3	39	1.71
425290--425327	18	2.1	18	100	0	76	52	13	7	26	1.67
426589--426621	15	2.2	15	89	10	50	33	24	3	39	1.71
428061--428101	22	1.9	21	85	5	55	63	7	7	21	1.45
429334--429366	15	2.2	15	89	10	50	78	9	0	12	0.95
429303--429506	100	2.1	99	80	6	225	65	7	7	19	1.42
429714--429771	25	2.2	25	84	6	71	39	10	10	39	1.74
429910--429955	24	1.9	24	82	8	58	13	4	13	69	1.33
445596--445772	51	3.4	51	86	3	239	32	13	22	31	1.93
445596--445826	104	2.2	103	81	6	252	32	13	22	31	1.93
449620--449666	18	2.7	18	80	3	51	40	25	14	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456940--456990	10	4.9	10	75	15	50	66	1	31	0	1.03
457386--457428	17	2.5	17	84	0	50	23	16	13	46	1.83
458624--458907	147	1.9	147	94	0	496	36	21	15	27	1.93
467249--467350	28	3.6	28	81	0	105	29	18	17	34	1.94
469803--469834	15	2.1	15	100	0	64	40	34	12	12	1.81
469952--470104	23	6.7	23	89	0	225	32	4	14	48	1.64
472096--472161	21	3.1	21	86	0	96	39	21	12	27	1.88
484336--484386	14	3.8	13	74	20	52	68	0	31	0	0.90
484344--484394	16	3.2	15	84	15	59	70	0	29	0	0.87
484339--484392	17	3.6	16	74	25	55	68	0	31	0	0.90
492367--492424	26	2.2	26	93	3	98	8	18	0	72	1.10
497155--497597	69	6.4	69	85	2	462	22	23	23	30	1.99
497147--497597	207	2.2	206	82	3	521	22	23	23	30	1.99
500832--500913	8	10.5	8	67	22	50	46	2	1	50	1.22
500870--500913	16	2.8	16	86	13	56	50	2	0	47	1.13
501106--501165	13	4.6	13	80	12	70	31	5	11	51	1.60
501106--501165	26	2.3	26	91	0	93	31	5	11	51	1.60
503553--503630	23	3.4	22	72	27	72	17	7	3	70	1.27
503706--503751	10	4.4	10	80	20	58	10	2	8	78	1.05
503706--503756	21	2.5	20	87	6	75	11	3	7	76	1.13
504583--504746	42	3.9	42	84	6	224	26	16	26	29	1.97
504575--504745	84	2.0	84	92	2	281	26	16	27	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504581--505404	78	10.5	77	82	4	848	25	17	24	32	1.97
505547--505662	42	2.8	42	78	5	119	20	23	14	41	1.89
505705--505873	49	3.4	49	76	3	169	22	27	14	36	1.93
505666--505905	98	2.4	98	79	2	284	21	25	16	36	1.94
506619--506657	10	3.8	10	83	6	51	0	17	0	82	0.68
506614--506657	16	2.8	15	77	12	52	0	22	0	77	0.77
510532--510567	7	5.4	7	93	6	58	72	13	13	0	1.13
510533--510567	6	5.5	6	96	3	52	71	14	14	0	1.15
511420--511661	109	2.3	107	82	5	285	38	18	13	30	1.89
511420--511728	109	2.9	104	80	7	266	36	19	13	30	1.90
511783--511812	7	4.4	7	91	8	53	16	0	0	83	0.65
511787--511812	13	2.0	13	100	0	52	15	0	0	84	0.62
512078--512193	30	3.8	31	81	4	123	41	5	18	34	1.73
512077--512193	60	2.0	60	84	3	155	41	5	18	34	1.73
514686--514717	15	2.1	16	94	5	57	34	6	18	40	1.76
528570--528594	3	8.3	3	100	0	50	0	68	0	32	0.90
531645--531795	75	2.0	75	100	0	302	33	15	15	34	1.90
534099--534140	20	2.0	22	86	9	61	40	2	0	57	1.12
540022--540183	36	4.5	36	86	1	218	30	25	16	28	1.96
542116--542231	56	2.1	56	100	0	232	30	15	6	47	1.72
543041--543227	94	2.0	94	93	0	320	36	2	12	49	1.52
546930--546994	29	2.2	28	78	10	69	23	6	23	47	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
548340--548513	36	4.8	36	83	0	186	28	27	16	27	1.97
556499--556524	7	3.7	7	100	0	52	30	0	53	15	1.42
565465--565516	20	2.8	18	83	11	70	42	0	3	53	1.19
579874--579973	15	7.1	15	70	15	61	57	5	34	4	1.39
579870--579958	43	2.1	43	97	0	169	59	5	30	4	1.40
580378--580421	17	2.6	17	85	0	61	15	11	11	61	1.57
580378--580431	17	3.2	16	84	12	56	16	11	11	61	1.57
589420--589478	18	3.3	18	77	13	77	52	3	5	38	1.40
589438--589496	17	3.4	17	77	13	75	50	1	5	42	1.34
589417--589495	35	2.3	35	100	0	158	49	2	5	43	1.38

Tables:   1   2   3