genome.fa.s15328.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015328.1 Kokia drynarioides strain JFW-HI SEQ_130374, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  430948

Tables:   1   2   

This is table  2  of  2  ( 150 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366246--366273	2	14.0	2	100	0	56	50	50	0	0	1.00
371051--371151	30	3.5	28	72	18	100	32	5	26	34	1.81
371022--371302	59	4.8	60	83	4	287	33	4	25	35	1.76
371051--371153	29	3.6	28	76	14	111	32	5	27	34	1.81
371075--371337	29	8.9	30	73	13	174	33	4	25	36	1.76
371079--371337	59	4.4	58	81	7	256	34	4	25	36	1.75
373054--373117	19	3.6	18	83	6	85	56	3	3	37	1.31
373275--373328	21	2.6	22	80	8	60	64	0	1	33	1.04
376870--376942	26	3.0	23	77	14	67	60	4	2	32	1.30
376954--376993	21	1.9	21	89	0	62	50	2	5	42	1.37
376989--377058	9	7.4	9	79	9	77	64	5	0	30	1.17
377007--377071	18	3.4	19	72	17	55	60	7	0	32	1.25
377427--377496	29	2.3	29	80	4	68	35	2	4	57	1.33
377514--377558	19	2.4	19	81	3	56	62	8	0	28	1.25
377709--377746	8	4.1	9	81	18	51	42	2	0	55	1.14
385853--385930	37	2.1	37	95	0	138	32	12	17	37	1.88
386724--386778	29	2.0	29	85	7	78	30	0	7	61	1.23
390890--390954	14	4.6	14	71	5	60	70	3	23	3	1.15
392624--392680	30	1.9	30	82	7	71	47	1	12	38	1.51
393949--394005	24	2.3	24	79	8	62	49	1	1	47	1.22
396411--396539	53	2.5	52	93	1	222	27	13	20	39	1.89
398265--398301	13	2.8	13	91	4	56	83	0	5	10	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
399921--399987	31	2.2	30	89	5	100	34	13	8	43	1.75
418218--418267	22	2.2	21	83	13	64	54	4	0	42	1.19
420196--420238	19	2.2	20	91	4	70	37	0	4	58	1.19
420194--420257	29	2.2	28	88	2	92	37	0	6	56	1.25
423299--423343	23	1.9	24	82	13	58	28	2	0	68	1.01
429101--429234	60	2.2	60	84	2	171	29	12	10	47	1.75
430518--430572	11	5.0	11	84	10	60	74	0	23	1	0.91
430529--430582	4	13.8	4	81	11	67	75	0	24	0	0.80

Tables:   1   2

The End!