genome.fa.s15333.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015333.1 Kokia drynarioides strain JFW-HI SEQ_130380, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  503969

Tables:   1   2   

This is table  2  of  2  ( 174 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342843--343282	24	18.3	24	80	0	378	38	16	25	20	1.93
342843--343282	48	9.2	48	83	1	513	38	16	25	20	1.93
342843--343282	72	6.1	72	79	2	416	38	16	25	20	1.93
343292--343324	2	16.5	2	93	0	57	54	0	0	45	0.99
343865--343953	40	2.2	40	95	0	160	22	7	28	41	1.81
347534--347580	21	2.4	19	82	10	58	44	14	2	38	1.58
352476--352501	13	2.0	13	100	0	52	38	0	15	46	1.46
352937--352987	25	2.0	25	85	7	68	52	17	3	25	1.61
357702--357746	20	2.2	20	96	0	81	33	8	24	33	1.86
358249--358287	13	3.1	13	96	3	71	30	0	0	69	0.89
364535--364783	111	2.2	111	80	1	275	30	11	6	51	1.63
364921--364972	20	2.6	20	72	6	52	21	13	7	57	1.61
366602--366643	17	2.6	16	82	14	50	59	2	4	33	1.31
367160--367197	6	6.3	6	93	0	58	76	0	5	18	0.97
367568--367632	29	2.2	29	84	13	80	70	0	4	24	1.06
367893--368032	19	7.7	19	68	17	84	30	2	1	66	1.12
367893--368032	9	15.3	9	71	15	83	30	2	1	66	1.12
367898--368031	65	2.1	63	82	9	157	29	2	1	66	1.13
368093--368134	13	3.1	14	83	6	52	40	9	11	38	1.75
368753--368791	17	2.4	16	87	8	60	30	2	0	66	1.05
371738--371792	22	2.5	23	80	11	62	34	0	0	65	0.93
372515--372585	32	2.2	32	89	0	106	63	5	4	26	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374018--374049	15	2.1	15	94	0	55	34	9	0	56	1.32
374954--374997	18	2.5	18	88	3	63	45	0	4	50	1.22
376159--376219	26	2.3	27	80	13	72	57	0	3	39	1.15
377989--378018	3	10.0	3	100	0	60	33	0	0	66	0.92
382402--382469	33	2.1	33	100	0	136	32	10	13	44	1.77
386045--386086	23	1.9	21	85	9	57	11	9	16	61	1.55
395174--395203	16	1.9	16	93	6	53	20	3	0	76	0.92
408816--408964	73	2.0	73	100	0	298	31	13	24	30	1.93
423956--424041	42	2.1	40	87	10	120	32	17	22	27	1.96
456376--456426	22	2.2	25	86	10	72	66	3	0	29	1.09
457300--457394	41	2.3	41	90	0	145	37	28	5	28	1.79
459746--459784	18	2.2	18	86	4	53	33	10	5	51	1.58
461251--461293	21	2.0	21	100	0	86	27	13	27	30	1.95
463168--463208	18	2.3	18	95	0	73	19	24	24	31	1.98
463200--463297	19	5.2	19	77	10	85	28	19	28	23	1.98
463214--463297	38	2.2	38	79	8	100	28	19	29	22	1.98
464901--464956	20	2.8	20	86	0	76	32	28	7	32	1.84
465418--465531	59	1.9	59	96	0	210	34	9	28	27	1.88
472201--472274	23	3.2	23	64	21	64	39	4	10	45	1.58
472205--472297	46	2.0	46	95	0	168	43	5	9	41	1.60
475662--475760	49	2.0	50	88	2	146	30	18	9	42	1.81
484469--484501	12	2.8	12	90	4	50	63	0	0	36	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485379--485413	2	17.5	2	87	0	52	48	5	0	45	1.26
485377--485415	12	3.2	12	88	0	60	48	10	0	41	1.37
487714--487744	2	15.5	2	100	0	62	51	48	0	0	1.00
488906--488954	24	2.0	24	88	7	73	8	36	0	55	1.30
489021--489082	30	2.1	30	100	0	124	19	9	11	59	1.58
490237--490336	25	4.0	25	79	5	71	34	19	20	27	1.96
490270--490392	25	5.0	25	83	2	140	33	21	17	27	1.96
490270--490426	50	3.2	50	81	1	154	32	21	16	29	1.95
490321--490460	25	5.6	25	81	1	111	31	18	16	33	1.93
503911--503948	18	2.3	16	83	16	51	68	0	18	13	1.21

Tables:   1   2

The End!