genome.fa.s15335.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015335.1 Kokia drynarioides strain JFW-HI SEQ_130382, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  733037

Tables:   1   2   

This is table  1  of  2  ( 160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
414--458	21	2.2	21	88	4	65	57	13	2	26	1.48
630--664	18	1.9	18	94	0	61	60	14	0	25	1.35
830--867	4	9.8	4	88	5	51	0	18	0	81	0.69
1455--1513	30	2.0	30	96	0	109	62	11	0	25	1.29
1689--1751	30	2.1	29	85	2	81	44	3	1	50	1.27
1798--1832	13	2.8	12	83	8	52	22	0	11	65	1.24
2001--2049	22	2.1	22	88	7	71	61	0	2	36	1.08
4150--4189	20	1.9	22	90	10	66	35	5	10	50	1.58
12172--12236	27	2.4	27	84	0	76	18	4	32	44	1.70
12800--12825	5	5.2	5	100	0	52	0	0	80	19	0.71
13522--13585	31	2.1	31	100	0	128	42	3	25	29	1.70
14173--14267	31	3.1	29	78	13	100	54	10	14	20	1.69
19837--19897	16	3.7	16	73	4	50	37	19	3	39	1.68
24772--24809	20	2.0	19	85	10	51	65	0	5	28	1.14
25087--25129	19	2.1	21	91	8	72	25	4	2	67	1.22
25143--25185	15	2.6	17	78	17	54	30	2	2	65	1.18
26818--26850	9	3.7	9	95	0	57	54	12	0	33	1.37
39261--39302	20	2.1	20	82	8	50	21	0	0	78	0.75
44958--44994	16	2.2	18	85	9	51	51	2	5	40	1.39
45186--45246	18	3.3	18	79	2	68	32	4	0	62	1.17
45270--45307	20	1.9	20	89	10	60	36	0	0	63	0.95
51894--51921	12	2.3	12	100	0	56	60	0	39	0	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58432--58497	23	2.9	24	82	8	84	39	19	12	28	1.88
58456--58497	12	3.6	12	77	6	50	40	21	14	23	1.90
59310--59368	29	2.0	30	86	3	84	49	11	6	32	1.66
60018--60063	22	2.0	24	87	8	69	54	0	19	26	1.44
68741--68781	21	1.9	22	85	14	59	31	7	12	48	1.68
75325--75363	19	2.0	20	90	5	62	64	5	0	30	1.15
82291--82394	52	2.0	52	98	0	199	24	28	8	38	1.85
84808--84849	20	2.0	20	82	13	50	54	2	7	35	1.41
89180--89309	60	2.2	60	82	8	149	43	14	4	37	1.66
96838--96900	30	2.1	31	84	3	83	34	1	11	52	1.47
101346--101407	29	2.1	30	81	3	72	41	3	1	53	1.27
102249--102299	20	2.6	21	76	14	56	52	0	1	45	1.12
108724--108753	2	15.0	2	100	0	60	50	0	0	50	1.00
123971--124015	18	2.5	19	72	20	51	44	13	0	42	1.43
128393--128422	16	1.9	16	93	6	53	70	0	0	30	0.88
129068--129114	25	1.9	25	83	12	62	57	10	6	25	1.56
130550--130592	21	2.0	22	86	9	61	58	4	2	34	1.32
137851--137938	46	1.9	46	85	0	122	29	7	20	42	1.80
138198--138241	20	2.2	20	84	8	54	54	6	0	38	1.27
142490--142648	85	1.9	85	88	6	243	38	18	10	33	1.84
142785--142823	19	2.0	20	85	10	53	51	0	2	46	1.14
142826--142891	10	6.8	10	70	19	50	68	0	6	25	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
142825--142877	19	2.7	19	83	16	72	67	0	5	26	1.12
142825--142968	9	15.1	9	68	21	55	63	2	4	29	1.27
142826--142965	29	4.9	29	72	20	107	64	2	5	28	1.26
143152--143258	37	2.8	37	81	12	128	37	0	2	58	1.19
153158--153195	16	2.4	16	95	0	67	15	18	18	47	1.83
172188--172225	19	2.1	18	85	9	51	13	5	5	76	1.13
173133--173218	43	2.0	43	95	0	154	25	11	20	41	1.86
179697--179773	38	2.0	38	100	0	154	33	31	12	22	1.92
183779--183808	2	15.5	2	93	6	53	53	0	0	46	1.00
185039--185100	6	10.3	6	100	0	124	32	50	0	17	1.47
190672--190703	14	2.3	14	94	0	55	90	0	9	0	0.45
193283--193369	9	9.7	9	70	14	54	40	2	2	55	1.25
193333--193374	18	2.2	20	87	8	61	42	0	2	54	1.13
198768--198824	17	3.4	16	78	9	60	42	0	3	54	1.17
199521--199595	3	25.0	3	87	0	105	61	1	2	34	1.18
200573--200777	30	6.9	29	78	5	187	34	26	4	34	1.77
200573--200708	59	2.3	59	83	3	175	36	27	2	32	1.72
200577--200777	89	2.3	90	85	6	268	35	25	4	34	1.77
201049--201240	96	2.0	96	81	8	221	28	20	14	36	1.92
203296--203336	22	1.9	22	85	5	57	29	2	7	60	1.36
212102--212152	21	2.6	19	82	11	66	64	5	0	29	1.17
212760--212828	36	1.9	36	82	5	86	55	1	10	33	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
214120--214157	13	2.7	14	80	11	51	31	0	5	63	1.17
214574--214599	2	13.0	2	100	0	52	50	0	0	50	1.00
214871--214910	20	2.0	20	85	5	53	47	2	7	42	1.45
218896--218928	6	5.5	6	100	0	66	15	36	0	48	1.45
222640--222679	19	2.0	20	85	4	55	47	12	0	40	1.41
223385--223445	31	2.0	31	90	9	99	31	3	13	52	1.56
236066--236189	62	2.0	62	95	0	221	25	12	22	39	1.89
237708--237776	31	2.3	31	85	7	88	36	2	1	59	1.21
257009--257043	18	1.9	18	94	0	61	2	8	34	54	1.46
259691--259740	23	2.2	22	85	7	64	42	0	2	56	1.11
269970--270006	10	3.5	11	89	10	51	29	0	2	67	1.04
281662--281691	8	3.8	8	95	0	51	46	0	0	53	1.00
286479--286567	30	2.9	29	86	5	106	19	25	2	52	1.57
287122--287160	17	2.2	17	86	4	51	41	5	0	53	1.23
294178--294220	14	3.0	14	76	6	50	69	11	0	18	1.17
297493--297560	26	2.6	26	100	0	136	30	0	7	61	1.23
297735--297788	20	2.7	20	91	0	90	72	3	5	18	1.20
298216--298242	6	4.5	6	100	0	54	14	33	37	14	1.88
299571--299596	12	2.2	12	100	0	52	38	15	19	26	1.91
299846--299892	26	1.9	25	83	12	62	44	8	10	36	1.70
301086--301130	15	2.8	17	74	19	51	35	0	0	64	0.94
311938--312021	11	7.8	11	73	5	64	66	5	3	23	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311968--312019	22	2.4	21	90	3	77	69	5	5	19	1.30
314149--314196	18	2.7	18	83	0	60	41	2	0	56	1.11
314943--314967	6	4.2	6	100	0	50	84	0	0	16	0.63
318487--318521	17	1.9	19	88	11	56	65	0	0	34	0.93
318497--318535	17	2.2	17	86	4	51	66	0	0	33	0.92
318487--318535	18	2.7	17	84	9	53	63	0	0	36	0.95
319591--319750	86	1.9	85	92	5	272	46	5	7	40	1.56
320260--320304	20	2.2	21	88	4	65	31	4	0	64	1.13
320260--320311	21	2.5	21	84	3	70	36	3	0	59	1.16
320259--320311	20	2.6	19	80	11	61	37	3	0	58	1.16
320757--320784	5	5.6	5	100	0	56	21	17	17	42	1.89
343693--343725	17	1.9	17	93	0	57	48	15	15	21	1.81
347069--347094	5	5.2	5	100	0	52	19	61	0	19	1.35
351120--351443	160	2.0	160	98	0	630	43	18	14	22	1.87
353880--353905	3	8.7	3	100	0	52	34	0	65	0	0.93
353985--354018	6	5.7	6	100	0	68	14	0	52	32	1.42
366636--366669	16	2.1	16	88	0	50	38	2	0	58	1.13
370817--370863	25	1.9	25	83	12	62	55	0	2	42	1.12
373789--373818	11	2.7	11	100	0	60	56	16	0	26	1.40
378348--378397	16	3.2	16	72	13	50	48	0	2	50	1.12
392229--392264	18	2.0	18	88	0	54	55	0	2	41	1.14
407764--407794	14	2.2	14	100	0	62	19	29	6	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
408540--408586	15	2.8	17	78	15	53	63	2	0	34	1.06
411156--411194	6	6.5	6	93	0	69	15	51	2	30	1.57
418455--418838	126	3.0	126	95	0	680	26	17	28	27	1.98
420420--420451	15	2.0	17	88	11	50	37	0	0	62	0.95
431257--431295	19	2.0	21	90	10	64	53	0	2	43	1.14
431355--431399	22	2.0	22	87	8	65	28	8	13	48	1.72
437286--437367	42	2.0	42	82	4	103	29	7	37	25	1.83
442840--442871	2	16.0	2	100	0	64	50	0	0	50	1.00
454063--454105	22	2.0	22	85	0	59	23	16	9	51	1.73
462963--463013	25	2.0	27	84	7	70	27	9	3	58	1.47

Tables:   1   2