genome.fa.s15353.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015353.1 Kokia drynarioides strain JFW-HI SEQ_130400, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  481496

Tables:   1   2   

This is table  2  of  2  ( 191 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
338830--338854	10	2.5	10	100	0	50	92	0	8	0	0.40
339736--339881	50	2.9	50	78	2	159	39	19	20	19	1.92
339787--339902	50	2.3	50	80	1	135	39	20	20	18	1.92
339937--340068	40	3.3	40	90	2	203	32	28	15	23	1.95
339937--340108	80	2.2	79	83	7	206	31	27	16	24	1.96
339937--340108	40	4.3	40	87	2	179	31	27	16	24	1.96
340097--340213	50	2.3	50	95	0	207	40	20	16	23	1.91
340641--340670	11	2.6	11	94	5	51	26	0	0	73	0.84
341909--342092	30	6.0	30	79	8	176	44	21	2	31	1.67
341940--341993	17	3.4	16	70	19	51	46	18	0	35	1.50
341909--342093	93	2.0	89	83	12	225	44	21	2	31	1.66
344033--344057	2	12.5	2	100	0	50	0	52	0	48	1.00
346987--347028	4	10.8	4	85	14	61	76	0	23	0	0.79
346988--347039	12	4.1	12	82	7	59	75	0	25	0	0.81
348019--348112	30	3.2	30	67	8	84	36	5	12	45	1.65
349285--349369	43	2.0	43	84	9	111	30	12	10	45	1.76
349937--350073	45	3.0	45	82	0	166	31	25	22	20	1.98
350338--350405	14	4.9	14	79	13	61	52	23	1	22	1.55
350326--350391	28	2.3	29	79	7	82	54	25	0	19	1.44
350338--350416	28	2.9	28	86	1	97	51	24	2	21	1.60
354121--354186	4	16.2	4	76	9	62	3	30	0	66	1.06
354348--354426	27	3.0	25	85	10	97	27	35	12	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354358--354426	27	2.6	27	92	0	120	24	34	14	26	1.94
359963--359995	15	2.1	17	88	11	52	12	0	6	81	0.85
360314--360364	16	3.2	16	73	13	52	49	1	0	49	1.12
360838--360883	5	9.2	5	100	0	92	21	0	0	78	0.76
362786--362823	3	13.0	3	88	5	60	65	0	2	31	1.06
370330--370370	20	2.0	21	85	4	57	21	2	34	41	1.67
372576--372616	14	2.7	15	85	11	57	51	0	0	48	1.00
382752--382879	50	2.6	50	85	0	166	35	16	25	22	1.95
382936--383425	80	6.1	80	90	0	748	32	22	18	26	1.97
384116--384159	12	3.7	12	79	11	54	22	2	0	75	0.92
384130--384267	63	2.2	63	88	3	197	39	0	2	57	1.14
389217--389333	56	2.1	56	83	0	144	29	13	9	47	1.75
390167--390291	59	2.1	58	81	7	146	37	10	5	46	1.62
392525--392557	17	1.9	17	93	0	57	39	3	0	57	1.14
393583--393722	71	2.0	71	97	0	262	35	21	14	28	1.92
395029--395243	107	2.0	108	94	0	378	28	20	17	33	1.95
403974--404010	18	2.0	19	94	5	67	43	0	5	51	1.24
404529--404589	30	2.1	30	84	3	79	31	11	3	54	1.52
409483--409706	122	1.9	120	96	1	412	33	7	16	43	1.76
410723--410764	21	2.0	21	90	0	66	40	2	11	45	1.54
410736--410799	27	2.3	29	81	13	80	29	1	6	62	1.29
410737--410806	28	2.5	29	80	13	76	31	1	7	60	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
413968--414012	3	15.0	3	85	0	63	60	4	2	33	1.29
426999--427052	27	2.0	28	89	7	85	27	16	11	44	1.82
428366--428556	105	1.8	105	86	0	274	28	21	24	25	1.99
429258--429396	69	2.0	69	100	0	278	38	15	14	31	1.88
433064--433140	33	2.4	33	81	10	97	53	0	1	45	1.08
433064--433159	32	3.0	32	80	10	108	54	0	1	44	1.07
435973--436023	16	3.2	16	77	0	57	50	1	31	15	1.55
439668--439730	30	2.1	31	93	3	110	46	19	7	26	1.77
444930--444959	15	2.0	15	93	0	51	40	16	6	36	1.75
446297--446339	21	2.1	21	86	4	61	23	9	11	55	1.64
447638--447677	22	1.9	22	85	10	57	30	0	2	67	1.04
449659--449942	106	2.7	106	98	0	541	34	18	20	26	1.96
454303--454336	17	2.0	17	94	0	59	61	11	11	14	1.56
454922--454950	4	7.2	4	100	0	58	51	24	0	24	1.48
454922--455329	142	3.0	139	82	5	476	27	13	19	38	1.89
455084--455344	130	2.0	128	86	1	360	25	11	21	41	1.87
460928--460970	20	2.0	22	82	8	54	34	13	11	39	1.82
463767--463829	31	2.0	31	90	0	99	31	11	14	42	1.80
465503--465562	31	1.9	31	86	0	84	41	11	5	41	1.63
467890--467940	23	2.2	24	75	10	61	9	11	17	60	1.57
468160--468215	28	2.0	28	86	6	78	19	0	12	67	1.22
469496--469528	2	17.0	2	93	6	59	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
476050--476125	40	2.0	38	82	12	93	22	23	25	28	1.99
477853--477928	40	2.0	38	82	12	93	22	23	25	28	1.99
479459--479492	17	1.9	18	88	5	52	26	0	8	64	1.22
480436--480473	17	2.2	18	90	4	60	39	2	0	57	1.12
480504--480538	14	2.6	14	86	4	54	42	22	8	25	1.82

Tables:   1   2

The End!