genome.fa.s15359.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015359.1 Kokia drynarioides strain JFW-HI SEQ_130406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  556503

Tables:   1   2   3   

This is table  1  of  3  ( 247 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3496--3532	18	2.1	18	100	0	74	16	21	5	56	1.59
5820--5907	46	1.9	46	95	0	158	45	6	5	42	1.54
15105--15164	23	2.7	22	74	5	59	43	3	3	50	1.35
15147--15213	12	5.8	12	73	16	52	41	0	2	55	1.15
15253--15285	6	5.3	6	96	3	57	30	0	3	66	1.06
15233--15285	18	2.9	18	83	13	56	28	0	7	64	1.21
16985--17045	31	1.9	32	87	9	90	39	6	6	47	1.55
20338--20397	25	2.4	25	81	13	88	50	36	0	13	1.42
34295--34443	23	6.5	23	76	0	109	44	20	17	16	1.86
44520--44558	2	19.5	2	94	0	69	53	0	0	46	1.00
46681--46780	23	4.5	22	69	15	62	58	2	4	36	1.29
47940--47971	8	4.0	8	100	0	64	37	0	0	62	0.95
49153--49208	29	1.9	30	85	7	80	53	12	7	26	1.64
52918--52980	31	2.0	32	87	3	92	47	4	15	31	1.67
57300--57377	35	2.3	33	84	4	102	23	6	10	60	1.52
57883--57932	16	3.0	16	78	21	50	32	0	2	66	1.03
60175--60338	61	2.7	61	77	11	156	34	10	4	50	1.57
60264--60387	32	3.9	31	67	3	86	40	10	2	46	1.51
72625--74607	328	6.0	326	85	5	2461	36	13	10	38	1.80
72297--74607	654	3.5	643	83	7	2697	36	13	10	39	1.80
77427--77459	2	16.5	2	93	0	57	0	45	0	54	0.99
77649--77691	19	2.1	19	83	12	50	46	0	9	44	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74579--80213	340	16.9	327	80	9	5732	35	12	12	38	1.82
82066--82112	24	2.0	24	91	4	78	44	6	4	44	1.49
82061--82113	23	2.3	22	81	9	70	41	5	5	47	1.51
85436--85595	74	2.2	74	84	4	207	50	1	25	23	1.57
86133--86168	18	1.9	19	88	5	56	33	11	8	47	1.69
89584--89765	96	1.9	96	85	6	253	36	13	19	30	1.90
90031--90582	30	18.7	29	76	13	398	34	5	27	32	1.79
90014--90570	59	9.4	58	76	13	369	34	5	27	32	1.80
90105--90570	89	5.2	87	79	11	416	34	5	27	32	1.80
91634--91669	3	11.7	3	88	5	54	36	0	0	63	0.94
91649--91701	27	2.0	27	88	0	79	49	3	0	47	1.19
91656--91696	18	2.3	19	87	12	68	48	2	0	48	1.14
92388--92453	6	11.2	6	76	9	64	54	3	0	42	1.15
92390--92486	17	5.5	17	78	13	90	55	6	0	38	1.25
92891--93428	200	2.7	199	85	3	707	21	24	19	35	1.96
101040--101082	21	2.0	22	86	13	63	13	25	11	48	1.77
105353--105759	30	13.7	29	74	11	285	33	4	29	31	1.79
105353--105752	89	4.5	87	75	13	318	34	5	29	31	1.79
106810--106842	9	3.9	9	84	15	52	39	0	0	60	0.97
106810--106860	15	3.3	15	89	8	68	41	0	1	56	1.10
107561--107620	29	2.1	29	87	6	86	53	3	0	43	1.17
107560--107670	35	3.2	34	83	10	118	54	5	0	40	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107560--107670	17	6.4	17	82	7	134	54	5	0	40	1.24
107560--107637	6	13.3	6	77	10	81	53	2	0	43	1.14
108927--109004	38	2.1	38	92	0	129	44	19	20	15	1.86
114776--115212	59	7.5	58	78	11	328	32	3	29	33	1.76
114835--115212	29	12.9	29	80	11	341	33	3	29	33	1.74
117307--118178	206	4.2	206	94	0	1501	22	22	19	35	1.96
118003--118353	175	2.0	175	93	0	594	24	22	17	36	1.94
118046--118329	86	3.3	84	67	15	236	25	22	16	35	1.94
130252--130423	59	2.9	59	85	5	242	33	4	27	33	1.78
130272--130441	29	5.8	29	77	8	182	35	5	27	32	1.79
131215--131239	13	1.9	13	100	0	50	0	20	0	80	0.72
131442--131519	30	2.5	31	77	8	88	34	5	1	58	1.28
131475--131541	3	22.3	3	87	6	100	34	2	0	62	1.10
132116--132178	17	3.7	17	93	4	101	52	4	0	42	1.22
132114--132167	6	9.2	6	75	24	53	50	3	0	46	1.19
144201--144225	6	4.2	6	100	0	50	48	36	16	0	1.46
144872--145032	79	2.0	79	98	0	313	37	17	14	31	1.89
146241--146302	24	2.6	24	82	12	83	59	0	1	38	1.07
146323--146347	12	2.1	12	100	0	50	36	24	16	24	1.94
161220--161246	7	3.9	7	100	0	54	14	0	0	85	0.61
163007--163033	11	2.5	11	100	0	54	51	7	7	33	1.58
163323--163351	9	3.2	9	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
171424--171639	97	2.2	97	95	1	389	32	8	19	38	1.83
171962--171994	9	3.7	9	91	0	57	54	0	45	0	0.99
173688--173783	43	2.3	40	77	16	113	34	12	8	44	1.72
173699--173791	43	2.2	42	86	5	125	34	10	7	47	1.67
174350--174473	45	2.8	44	87	2	167	32	25	23	18	1.97
174752--174828	28	2.8	27	82	5	75	49	19	3	27	1.66
177838--177910	4	18.2	4	72	10	51	0	35	0	63	0.95
177838--177898	20	3.5	17	79	16	63	0	37	0	60	0.97
177845--177902	20	2.8	20	94	2	98	0	37	0	60	0.97
187330--187404	23	3.3	22	83	3	87	58	24	6	10	1.55
187349--187449	23	4.4	23	77	1	114	53	26	6	12	1.64
187592--187620	15	1.9	15	100	0	58	20	44	0	34	1.52
190602--190638	13	2.8	13	100	0	74	37	8	32	21	1.83
198740--198831	17	5.5	16	78	10	78	50	1	1	47	1.15
198759--198831	6	13.0	6	73	13	57	52	1	0	46	1.09
198755--198830	23	3.1	23	77	18	82	51	1	0	47	1.09
198777--198832	11	5.0	11	78	4	58	55	1	0	42	1.10
199529--199583	28	2.0	26	89	6	83	41	1	0	56	1.10
200560--200587	8	3.5	8	100	0	56	89	0	0	10	0.49
210698--210764	30	2.2	30	84	7	82	34	1	1	62	1.13
210933--210958	6	4.3	6	100	0	52	30	38	30	0	1.58
211197--211221	5	5.0	5	100	0	50	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
211766--211805	15	2.5	16	88	8	55	67	0	0	32	0.91
212479--212593	58	2.0	58	91	0	185	39	12	18	30	1.87
218248--218272	5	5.0	5	100	0	50	20	0	40	40	1.52
218697--218731	2	17.5	2	100	0	70	48	0	0	51	1.00
219090--219150	30	2.0	30	83	0	77	24	29	34	11	1.91
222550--222608	24	2.6	23	81	5	66	47	3	1	47	1.29
224544--224603	27	2.2	28	81	3	68	55	1	1	41	1.20
225696--225775	35	2.3	36	81	14	96	35	6	1	57	1.32
225732--225794	28	2.2	28	86	5	92	33	4	1	60	1.27
226435--226488	23	2.4	22	75	9	54	48	20	22	9	1.78
226441--226489	23	2.1	23	84	3	62	48	22	20	8	1.75
226491--226538	18	2.6	18	86	3	60	77	4	6	12	1.11
226845--226993	60	2.5	60	83	3	174	24	11	8	55	1.63
227172--227324	60	2.6	59	78	5	164	56	5	9	28	1.53
227146--227324	61	3.1	57	76	10	157	57	6	8	27	1.52
239410--239465	22	2.6	22	78	13	62	57	1	0	41	1.09
247149--247186	19	2.0	19	90	10	60	60	5	7	26	1.46
247240--247312	28	2.6	28	82	8	87	58	5	0	35	1.21
247243--247297	9	5.9	9	76	16	58	61	5	0	32	1.19
250845--250883	16	2.5	15	79	4	51	38	0	0	61	0.96
259170--259204	2	17.5	2	100	0	70	51	0	48	0	1.00
261366--261584	55	3.9	56	83	5	248	48	14	8	28	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
261366--261571	113	1.8	113	85	2	288	49	13	8	29	1.71
267588--267637	23	2.2	23	89	7	75	12	22	24	42	1.87
270657--270917	123	2.1	123	95	0	468	38	17	21	22	1.93
277071--277220	60	2.5	61	84	4	196	40	14	6	38	1.71
281833--281888	23	2.4	23	84	0	76	23	10	21	44	1.83
288491--288522	17	1.9	16	93	6	55	18	21	3	56	1.56
289192--289255	28	2.3	28	86	7	87	29	0	4	65	1.13
289599--289718	56	2.1	55	81	4	141	57	9	10	23	1.60
292864--292904	17	2.3	18	87	4	57	48	2	0	48	1.14
294606--294787	29	6.2	29	82	8	208	36	29	2	31	1.72

Tables:   1   2   3