genome.fa.s15359.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015359.1 Kokia drynarioides strain JFW-HI SEQ_130406, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  556503

Tables:   1   2   3   

This is table  2  of  3  ( 247 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294601--294774	59	3.0	58	89	5	244	35	29	2	32	1.72
294757--294931	59	2.9	59	78	7	176	33	24	4	37	1.76
294606--294813	87	2.4	88	86	4	269	36	28	3	32	1.74
294791--294951	30	5.5	29	68	17	91	35	24	4	36	1.75
299199--299229	16	2.0	15	93	6	53	38	12	3	45	1.59
308166--308194	3	9.7	3	100	0	58	34	0	0	65	0.93
308997--309051	24	2.2	25	84	15	71	21	3	1	72	1.09
313472--313505	18	1.9	18	88	5	52	11	17	2	67	1.34
318628--318667	20	2.0	20	100	0	80	35	25	20	20	1.96
322592--322913	43	7.5	42	76	6	198	26	17	26	29	1.97
322659--322907	85	2.9	86	81	3	252	27	17	28	27	1.97
322593--322900	130	2.4	130	82	3	336	26	16	26	29	1.97
332205--332238	17	2.1	16	88	5	50	52	0	0	47	1.00
332225--332277	22	2.3	23	83	3	63	64	5	0	30	1.17
332252--332282	16	1.9	16	93	0	53	61	6	0	32	1.21
334407--334447	21	2.0	21	85	9	57	17	21	24	36	1.94
337579--337617	6	6.3	6	94	5	69	15	17	0	66	1.25
337597--337706	51	2.2	48	81	9	130	29	13	8	49	1.71
358491--358547	23	2.5	23	94	0	96	43	1	8	45	1.45
358491--358557	23	2.9	23	86	0	89	47	1	7	43	1.40
361347--361447	48	2.2	46	87	5	141	59	5	5	28	1.45
364233--364294	23	2.7	22	74	18	63	11	6	14	67	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364274--364317	21	2.2	20	83	4	52	13	2	15	68	1.31
365008--365059	27	1.9	27	84	7	70	75	3	19	1	1.06
365053--365097	12	3.7	11	83	16	54	86	2	2	8	0.73
365046--365099	21	2.5	22	82	5	58	85	1	5	7	0.81
367635--367659	7	3.6	7	100	0	50	76	0	24	0	0.80
376297--376329	16	2.1	16	100	0	66	30	24	6	39	1.79
380958--381007	23	2.2	22	89	10	75	30	0	0	70	0.88
380960--381007	22	2.2	22	88	7	71	29	0	0	70	0.87
380958--381016	23	2.6	24	79	12	63	32	0	0	67	0.91
380965--381015	23	2.2	24	86	10	70	31	0	0	68	0.90
381036--381094	25	2.3	25	91	2	91	28	1	3	66	1.18
381036--381099	26	2.5	25	89	5	92	29	1	3	65	1.17
391941--391973	16	2.0	17	94	5	59	36	3	0	60	1.12
406966--407031	33	2.0	34	87	3	98	43	4	10	40	1.59
407057--407129	29	2.4	30	84	4	94	26	13	9	50	1.72
407258--407300	18	2.4	18	88	7	61	53	0	0	46	1.00
410146--410170	2	12.5	2	100	0	50	52	0	0	48	1.00
411841--411901	30	2.0	30	100	0	122	26	19	21	32	1.97
415913--415987	28	2.7	27	75	15	73	20	1	29	49	1.57
417401--417434	3	11.3	3	100	0	68	0	32	0	67	0.91
422580--422745	58	2.8	58	84	9	205	43	1	1	53	1.16
422917--423005	32	2.8	32	91	0	142	28	24	4	42	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422905--423007	16	6.5	16	79	1	109	29	23	5	41	1.77
423046--423095	20	2.5	20	83	3	57	24	4	6	66	1.32
426747--426779	16	2.1	16	88	5	50	75	0	9	15	1.03
426747--426786	15	2.6	16	84	7	57	75	0	10	15	1.05
426754--426783	16	1.9	15	93	6	51	73	0	13	13	1.10
427160--427202	21	2.1	20	86	4	59	53	0	16	30	1.43
427676--427713	18	2.2	18	86	9	53	60	7	10	21	1.54
431491--431573	6	13.8	6	71	14	64	38	2	2	56	1.25
431491--431572	17	4.6	18	82	11	105	37	2	2	57	1.25
431491--431572	37	2.3	35	89	8	121	37	2	2	57	1.25
432280--432364	3	27.3	3	74	9	64	57	5	2	34	1.36
432255--432329	36	2.1	36	82	5	89	53	5	2	38	1.38
432255--432372	12	10.1	12	70	5	71	53	5	3	37	1.42
432489--432825	30	11.4	27	76	15	262	31	32	4	31	1.79
432467--432778	58	5.3	58	84	7	316	33	32	4	29	1.78
432467--432778	88	3.6	85	83	9	344	33	32	4	29	1.78
432467--432825	58	6.1	58	83	7	290	32	32	4	30	1.78
433147--433175	14	2.1	14	100	0	58	0	6	0	93	0.36
435124--435168	23	2.0	23	86	0	63	35	13	15	35	1.87
435214--435243	9	3.3	9	90	0	51	43	10	10	36	1.72
435214--435252	18	2.2	18	85	0	51	46	12	10	30	1.75
435390--435477	42	2.1	42	87	12	128	51	21	0	27	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
440566--440592	12	2.2	12	100	0	54	25	7	40	25	1.82
447875--447899	10	2.5	10	100	0	50	92	0	0	8	0.40
455953--455977	2	12.5	2	100	0	50	48	0	0	52	1.00
458076--458152	9	8.3	9	73	24	63	54	1	0	44	1.08
458078--458118	22	1.9	21	90	5	64	51	2	0	46	1.14
458081--458152	27	2.5	29	93	6	121	55	1	0	43	1.08
458105--458153	16	3.4	16	73	26	63	61	0	0	38	0.96
458795--458834	18	2.4	17	91	8	64	37	0	0	62	0.95
458801--458860	21	3.1	18	82	15	75	48	0	1	50	1.11
458801--458867	21	3.4	19	80	11	73	46	1	1	50	1.19
460223--460248	3	8.7	3	100	0	52	65	0	0	34	0.93
460476--460512	3	12.0	3	88	5	56	64	5	0	29	1.15
461366--461738	29	12.8	29	72	14	236	34	26	3	35	1.74
461366--461569	59	3.5	58	83	9	236	35	26	1	35	1.68
461523--461741	58	3.8	58	87	4	300	32	27	5	34	1.79
461723--461787	29	2.2	30	81	8	80	36	32	6	24	1.80
472712--472913	59	3.4	58	78	10	189	35	16	12	35	1.87
472893--472942	27	1.9	26	92	8	84	46	4	4	46	1.40
472922--473148	60	3.8	60	77	5	217	26	17	15	40	1.89
472934--473156	120	1.9	120	82	4	288	24	17	16	42	1.89
474626--475053	61	7.1	60	72	8	228	39	15	17	28	1.90
474620--475172	59	9.2	59	73	10	311	37	15	18	28	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
474617--475053	122	3.6	120	80	7	408	38	15	17	28	1.90
475965--476068	41	2.6	37	91	7	120	47	7	19	25	1.76
475976--476068	41	2.3	41	100	0	186	47	8	18	25	1.77
487723--487775	26	2.0	27	85	10	74	50	1	1	45	1.23
487732--487782	27	1.9	26	84	4	66	52	1	1	43	1.23
503897--503938	22	1.9	22	85	9	59	14	0	4	80	0.86
505623--505655	16	2.1	16	88	5	50	33	9	0	57	1.30
508074--508148	21	3.6	21	98	0	141	20	26	24	29	1.99
514928--514974	21	2.2	21	84	3	58	65	0	6	27	1.16
516735--516926	3	62.7	3	79	8	181	57	2	2	38	1.22
517992--518181	29	6.9	28	77	16	173	37	27	2	32	1.71
518029--518137	49	2.2	48	81	1	128	37	29	0	32	1.64
518078--518267	59	3.3	59	79	10	178	34	29	4	31	1.78
529032--529090	19	3.1	19	79	16	61	44	1	0	54	1.10
529044--529092	19	2.6	17	82	17	62	42	0	0	57	0.99
529856--529915	30	2.0	30	96	0	111	23	15	13	48	1.79
532360--532391	15	2.2	15	94	5	57	59	0	12	28	1.34
533060--533115	27	2.1	27	86	0	76	41	5	3	50	1.43
537004--537046	15	3.0	13	81	18	50	32	2	2	62	1.20
537615--537686	23	3.1	23	79	2	81	51	18	22	8	1.72
540054--540276	59	3.8	58	83	6	274	35	2	30	31	1.70
539956--540276	29	10.9	29	74	13	241	34	2	30	32	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
540054--540284	30	7.9	29	77	11	197	35	2	31	31	1.70
541201--541261	21	2.7	21	78	14	59	42	4	0	52	1.23
545480--545855	30	12.7	29	74	11	284	35	2	26	34	1.72
545395--545855	59	7.8	59	80	7	476	35	3	27	33	1.73
546566--546590	7	3.6	7	100	0	50	28	60	12	0	1.32
546822--546870	15	3.1	15	80	13	62	40	2	0	57	1.10
546821--546878	18	3.2	18	78	11	64	41	1	1	55	1.20
552870--552978	6	19.2	6	71	14	79	43	2	0	53	1.21
552883--552950	23	3.1	22	83	6	84	44	4	1	50	1.31
552878--552946	11	6.1	11	77	5	75	43	2	1	52	1.25

Tables:   1   2   3