genome.fa.s15365.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015365.1 Kokia drynarioides strain JFW-HI SEQ_130412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  483592

Tables:   1   2   

This is table  1  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5317--5349	2	16.5	2	100	0	66	48	0	0	51	1.00
11039--11071	2	16.5	2	100	0	66	48	0	0	51	1.00
18882--18914	16	2.0	17	88	5	50	51	0	0	48	1.00
40590--40615	3	8.7	3	100	0	52	65	0	0	34	0.93
40988--41045	27	2.3	24	79	8	62	51	0	1	46	1.11
41930--41970	19	2.1	19	86	9	55	26	0	9	63	1.25
41934--41975	21	2.1	21	86	8	61	28	0	4	66	1.12
46226--46268	2	21.5	2	100	0	86	48	0	0	51	1.00
46913--46941	2	14.5	2	100	0	58	48	0	0	51	1.00
60030--60069	20	2.0	21	85	5	55	70	5	7	17	1.30
66529--66622	30	3.2	28	71	23	68	28	5	29	36	1.79
66543--67040	29	17.0	28	71	15	287	30	4	31	33	1.77
66549--67068	59	8.9	58	87	5	701	30	4	30	34	1.76
66549--67068	117	4.4	117	87	5	712	30	4	30	34	1.76
68633--68709	17	4.6	16	79	9	82	51	5	1	41	1.32
68633--68709	34	2.3	34	83	0	100	51	5	1	41	1.32
68905--68950	20	2.2	21	88	3	67	63	6	0	30	1.20
68957--69007	24	2.0	24	85	7	66	56	1	0	41	1.10
75529--75567	17	2.3	17	86	0	51	48	5	0	46	1.24
78151--78176	6	4.3	6	100	0	52	34	19	30	15	1.93
83178--83224	19	2.4	19	85	3	58	48	0	0	51	1.00
83510--83544	17	2.1	17	89	5	54	65	2	0	31	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
83926--83956	13	2.4	13	94	0	53	22	6	3	67	1.28
85935--85991	26	2.1	27	83	3	71	29	8	8	52	1.62
87200--87380	96	1.9	96	79	8	208	37	11	17	33	1.86
87675--88294	59	10.7	59	76	12	519	32	3	28	35	1.73
87628--88087	118	4.0	110	80	12	330	32	3	28	35	1.74
87743--88299	118	4.7	118	83	6	668	32	3	28	35	1.73
87731--88299	177	3.2	176	83	6	699	32	2	28	35	1.73
87759--88283	30	18.0	26	78	12	182	32	3	28	35	1.73
89335--89394	9	6.0	9	75	21	57	48	1	1	48	1.21
90068--90136	17	4.0	17	86	1	93	52	1	1	44	1.19
90068--90137	6	12.0	6	77	11	65	52	1	1	44	1.18
90075--90138	23	2.8	23	81	11	69	56	1	1	40	1.18
101216--101267	21	2.6	20	73	8	52	55	3	5	34	1.42
107774--107852	32	2.4	34	87	6	117	49	5	6	39	1.50
116261--116286	13	2.0	13	100	0	52	92	0	7	0	0.39
122267--122298	2	16.0	2	100	0	64	50	0	0	50	1.00
129536--129567	15	2.1	15	94	0	55	59	6	0	34	1.23
135765--135815	24	2.1	24	96	0	93	23	5	7	62	1.44
136010--136060	23	2.2	23	100	0	102	31	17	9	41	1.82
136195--136239	20	2.2	22	84	11	60	44	2	2	51	1.26
136443--136485	21	2.0	21	82	8	52	25	4	9	60	1.47
141224--141286	18	3.5	19	76	8	69	65	4	3	26	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
145972--146022	24	2.1	24	85	10	68	64	1	1	31	1.15
155532--155570	18	2.2	19	86	9	55	35	5	2	56	1.35
163097--163125	13	2.1	14	93	6	51	75	0	3	20	0.94
165745--165782	20	1.9	19	89	5	58	44	13	15	26	1.83
167818--167890	36	2.0	36	100	0	146	38	19	16	26	1.92
175050--175128	25	3.2	24	87	5	113	45	16	26	11	1.81
178288--178337	23	2.2	23	85	7	66	30	0	0	70	0.88
178434--178534	45	2.1	47	85	10	145	27	24	7	39	1.83
189552--189591	3	13.3	3	100	0	80	32	0	0	67	0.91
189590--189617	13	2.2	13	100	0	56	82	0	0	17	0.68
204071--204112	15	2.6	16	81	14	50	26	11	4	57	1.54
210132--210164	17	2.1	17	88	11	52	60	0	3	36	1.12
223596--223695	52	2.0	48	92	7	164	32	16	12	40	1.84
224211--224277	33	2.0	33	100	0	134	23	8	26	40	1.84
228671--228746	36	2.1	36	85	0	98	43	11	17	27	1.84
234779--234832	24	2.2	25	83	9	67	44	3	5	46	1.44
235383--235812	231	1.9	229	81	3	524	36	9	7	46	1.65
236004--236037	8	4.2	8	85	14	52	38	0	0	61	0.96
239685--239716	16	1.9	17	93	6	57	81	0	18	0	0.70
239994--240028	3	12.0	3	87	6	54	71	0	28	0	0.86
239979--240019	9	4.6	9	87	0	55	80	0	19	0	0.71
239988--240022	12	2.9	12	91	0	52	77	0	22	0	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
248919--248953	16	2.2	16	90	5	54	71	0	0	28	0.86
250506--250558	4	12.8	4	80	7	52	69	0	30	0	0.88
250830--250879	16	3.2	16	73	21	52	34	0	6	60	1.21
251062--251104	21	2.1	21	91	4	70	55	13	2	27	1.51
251453--251499	7	7.1	7	79	13	55	0	42	0	57	0.98
251491--251533	4	10.8	4	85	9	61	0	23	0	76	0.78
251453--251528	25	3.0	24	81	9	80	0	35	0	64	0.94
251453--251537	25	3.2	28	75	17	74	0	35	0	64	0.94
251477--251544	11	6.3	11	75	13	52	1	27	0	70	0.96
254538--254582	15	3.0	15	90	0	63	0	15	33	51	1.44
254540--254580	18	2.3	18	95	0	73	0	12	34	53	1.38
254543--254577	6	5.8	6	86	0	52	0	14	34	51	1.42
257864--257903	19	2.1	19	85	4	53	30	0	2	67	1.04
260468--260525	23	2.5	23	88	0	80	55	5	10	29	1.55
260502--260540	15	2.6	15	83	0	51	53	5	10	30	1.56
264855--264914	29	2.0	30	90	3	95	58	10	3	28	1.46
266363--266431	19	3.9	18	70	30	60	42	5	0	52	1.25
266365--266431	25	2.7	23	76	15	62	40	5	0	53	1.25
274912--274968	29	1.9	30	85	3	80	31	10	12	45	1.76
277715--277765	26	2.0	26	84	7	68	43	3	15	37	1.66
277708--277771	26	2.5	26	77	10	60	43	6	12	37	1.68
278160--278199	18	2.2	18	86	8	55	25	7	12	55	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
280370--280431	25	2.5	24	75	15	63	38	0	3	58	1.15
290159--290249	44	2.0	44	80	2	101	31	6	15	46	1.71
293565--293932	183	2.0	183	90	0	574	30	25	12	31	1.93
295703--295746	22	2.0	22	95	0	79	38	25	0	36	1.56
296043--296206	51	3.2	51	90	1	249	34	14	22	28	1.93
296033--296283	102	2.4	101	76	8	238	35	15	21	27	1.93
303089--303123	11	3.2	11	87	0	52	0	37	2	60	1.12
304216--304266	24	2.1	24	100	0	102	11	54	0	33	1.37
305909--305947	15	2.6	15	83	0	51	25	33	0	41	1.56
307456--307484	15	1.9	15	100	0	58	20	41	3	34	1.69
307830--307866	15	2.5	15	86	0	56	16	40	0	43	1.48
312470--312864	218	1.8	218	89	1	621	36	21	15	26	1.94
317886--317920	3	12.0	3	87	6	54	68	0	28	2	1.04
319901--320006	52	2.0	52	94	0	185	27	14	23	34	1.93
319977--320029	26	2.0	26	100	0	106	30	11	18	39	1.86
319925--320084	78	2.1	78	93	0	275	28	14	21	35	1.93
320003--320165	52	3.1	52	88	0	245	26	15	23	34	1.95
319900--320136	130	1.8	130	92	0	402	27	15	22	34	1.94
321559--321630	31	2.4	31	80	17	89	23	13	19	43	1.87
322474--322561	31	2.8	32	74	6	99	47	6	15	29	1.72
322473--322561	33	2.8	32	75	8	94	47	7	15	29	1.74
322537--322613	29	2.7	26	78	13	64	58	6	9	25	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333558--333617	31	2.0	30	93	3	102	45	8	8	38	1.65
340975--341032	24	2.5	24	88	2	82	24	10	31	34	1.89
341760--341805	21	2.3	20	82	13	60	4	2	19	73	1.10
341740--341795	30	1.9	30	88	3	87	3	5	19	71	1.21
341725--341827	51	2.0	53	88	3	156	5	4	20	68	1.29
341801--341913	12	9.9	12	71	14	60	10	6	16	66	1.42
341771--341816	21	2.2	21	88	7	67	6	2	17	73	1.14
341830--341927	43	2.3	43	82	12	112	11	6	17	65	1.44
346223--346257	18	1.9	18	94	0	61	20	54	25	0	1.45
351554--351836	156	1.8	153	84	4	365	27	24	25	22	2.00

Tables:   1   2