genome.fa.s15365.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015365.1 Kokia drynarioides strain JFW-HI SEQ_130412, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  483592

Tables:   1   2   

This is table  2  of  2  ( 194 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
351851--351882	6	5.3	6	96	0	55	3	34	50	12	1.56
356018--356065	26	2.0	24	84	12	62	58	6	0	35	1.23
364723--364756	12	2.8	12	86	4	50	0	41	17	41	1.50
370445--370483	20	2.0	19	85	14	53	30	10	10	48	1.70
371898--372245	60	5.9	58	78	10	339	33	17	14	34	1.91
371898--372257	119	3.0	118	83	5	435	32	16	14	35	1.90
372228--372296	35	1.9	36	91	2	113	37	5	7	49	1.55
372263--372570	60	5.1	62	85	5	400	29	17	13	39	1.88
372177--372356	96	1.9	95	82	7	231	35	13	11	39	1.81
372109--372418	157	2.0	155	83	7	387	34	15	11	38	1.84
372263--372607	60	5.7	60	82	7	278	29	16	13	40	1.87
372782--372841	31	1.9	31	93	0	102	23	11	21	43	1.85
376309--376357	12	3.8	12	75	19	53	51	0	8	40	1.32
376461--377616	84	13.6	84	87	4	1559	42	5	4	46	1.47
376461--377616	171	6.8	169	88	3	1590	42	5	4	46	1.47
376472--377616	426	2.7	422	88	2	1647	42	5	4	46	1.47
379318--379378	30	2.0	30	87	6	88	27	8	3	60	1.41
379326--379415	30	3.1	30	87	3	112	27	7	2	62	1.35
380255--380338	43	2.0	42	97	2	159	45	9	14	30	1.77
380294--380554	61	4.3	62	86	3	341	36	16	19	28	1.93
380296--380572	122	2.3	122	86	2	378	35	15	18	30	1.92
385886--385951	25	2.6	24	76	9	60	54	24	6	15	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
386061--386090	2	15.0	2	100	0	60	50	0	0	50	1.00
387741--387771	2	15.5	2	100	0	62	51	0	0	48	1.00
392600--393284	182	3.7	184	94	0	1207	23	17	10	48	1.78
392600--393284	366	1.9	366	95	0	1228	23	17	10	48	1.78
396058--396086	3	9.7	3	100	0	58	34	34	0	31	1.58
397487--397516	16	1.9	15	93	6	51	80	0	13	6	0.91
397670--397694	6	4.2	6	100	0	50	68	0	0	32	0.90
398437--398470	17	1.9	18	88	5	52	67	8	0	23	1.18
400637--400669	2	16.5	2	100	0	66	48	0	0	51	1.00
402014--402065	9	5.8	9	86	0	50	19	0	13	67	1.23
402372--402425	25	2.2	25	100	0	108	35	3	3	57	1.34
408820--409086	54	4.9	54	78	5	279	28	28	13	30	1.94
408820--409095	109	2.5	110	81	5	339	28	27	13	29	1.94
409494--409540	20	2.2	22	88	7	71	57	4	8	29	1.48
409954--409997	20	2.2	20	84	8	54	65	4	4	25	1.30
410936--410990	27	2.1	27	93	3	94	20	34	0	45	1.51
411811--411882	30	2.4	31	83	6	94	23	13	15	47	1.81
414742--414780	8	4.5	8	87	12	51	61	5	0	33	1.18
414742--414780	17	2.2	17	86	13	53	61	5	0	33	1.18
415059--415084	5	5.2	5	100	0	52	19	19	42	19	1.90
415007--415310	150	2.0	152	96	3	567	30	13	23	32	1.93
416678--416980	154	2.0	148	88	5	446	41	21	12	25	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
421621--421666	19	2.3	20	85	10	60	39	0	6	54	1.26
426130--426177	9	5.3	9	97	0	87	58	2	0	39	1.10
426130--426185	18	3.1	18	89	0	58	55	1	5	37	1.33
426130--426185	27	2.1	27	86	0	76	55	1	5	37	1.33
431147--431190	23	1.9	23	85	0	61	38	4	4	52	1.42
432490--432542	24	2.1	25	86	10	72	32	0	1	66	1.03
432490--432546	12	4.8	12	77	16	55	31	0	1	66	1.02
432504--432551	24	2.0	24	84	8	62	33	0	6	60	1.22
432890--432959	30	2.4	30	95	2	124	15	17	7	60	1.57
433846--433883	20	2.0	20	89	5	60	44	28	13	13	1.81
435479--435878	29	13.8	29	73	9	305	34	30	3	32	1.75
435477--435947	59	8.1	59	81	7	489	33	30	4	31	1.77
435477--435898	116	3.6	113	83	7	497	34	30	4	31	1.76
435480--435947	29	16.1	29	71	13	232	33	30	4	31	1.76
436211--436402	96	2.0	96	82	2	233	30	17	12	39	1.87
444780--444806	12	2.2	12	100	0	54	85	0	7	7	0.75
461432--461516	21	4.2	21	67	17	63	11	20	32	35	1.89
461408--461484	38	2.1	38	92	2	129	12	20	31	35	1.91
461412--461496	38	2.3	37	87	2	116	14	21	29	35	1.92
461429--461545	59	2.0	58	89	1	180	14	20	29	35	1.92
463642--463762	22	5.5	22	88	0	188	11	20	23	43	1.85
464911--464942	12	2.7	12	100	0	64	34	34	25	6	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470871--470989	23	5.2	23	78	2	114	15	21	21	41	1.90
475294--476386	228	4.8	225	82	2	911	23	26	19	29	1.98
475276--476392	456	2.5	457	78	3	1020	23	27	19	29	1.98
477710--477743	3	12.0	3	87	12	54	67	0	0	32	0.91
479430--479481	23	2.2	24	83	10	63	28	23	0	48	1.51
479449--479493	6	7.5	6	87	0	54	22	28	0	48	1.50
482514--482840	45	7.3	45	86	1	397	11	18	29	40	1.85
482511--482845	135	2.5	135	88	0	483	11	18	28	40	1.86

Tables:   1   2

The End!