genome.fa.s15366.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015366.1 Kokia drynarioides strain JFW-HI SEQ_130413, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  628308

Tables:   1   2   

This is table  1  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1335--1433	39	2.5	39	93	0	171	25	5	16	53	1.63
1479--1541	32	2.0	32	90	0	99	31	12	19	36	1.89
4777--4834	25	2.5	23	74	17	57	27	18	24	29	1.98
7276--7305	14	2.2	14	94	5	53	36	10	23	30	1.87
23674--23702	12	2.5	12	94	5	51	72	0	13	13	1.13
23673--23704	11	2.6	13	85	14	50	71	0	15	12	1.14
25356--25411	24	2.3	24	90	6	87	67	5	19	7	1.34
33614--33726	48	2.4	48	89	0	172	53	12	8	24	1.66
39103--39131	11	2.5	12	94	5	51	13	0	10	75	1.04
41165--41215	26	2.0	26	84	0	66	31	19	23	25	1.98
41207--41338	37	3.6	36	78	8	124	28	15	25	30	1.96
42834--42871	7	5.3	7	87	6	58	18	0	0	81	0.69
47324--47375	16	3.2	16	78	5	61	5	23	1	69	1.20
47352--47396	21	2.3	19	88	11	72	4	20	0	75	0.97
49987--50128	50	2.8	50	76	8	153	36	13	14	35	1.85
50177--50241	33	1.9	34	81	9	80	46	9	13	30	1.75
50337--50369	17	1.9	17	88	11	50	66	6	0	27	1.15
51067--51107	21	1.9	22	90	5	66	24	31	17	26	1.97
51253--51331	39	2.0	39	100	0	158	22	10	12	54	1.68
58720--58780	32	1.9	32	93	0	104	37	18	11	32	1.86
61980--62018	13	2.9	14	80	7	53	5	28	0	66	1.12
61998--62054	31	1.9	29	86	10	80	3	31	0	64	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67200--67224	9	2.8	9	100	0	50	60	0	20	20	1.37
68623--68691	34	2.1	34	94	2	122	28	18	2	49	1.62
68964--69005	2	21.0	2	100	0	84	0	50	0	50	1.00
73687--73736	24	2.1	24	92	0	82	8	18	4	70	1.28
75232--75268	19	1.9	19	100	0	74	43	5	21	29	1.75
75621--75655	18	2.0	18	88	5	54	14	14	0	71	1.15
78596--78641	20	2.3	20	92	0	74	41	4	36	17	1.69
79670--79760	27	3.4	27	67	11	87	19	3	10	65	1.37
79641--79758	54	2.2	54	100	0	236	22	3	12	61	1.45
86321--86372	24	2.1	25	82	10	63	1	32	3	61	1.25
102456--102494	6	6.5	6	87	0	51	46	0	30	23	1.53
102556--102620	34	1.9	34	96	0	121	33	13	27	24	1.93
109204--109244	17	2.4	17	80	19	50	53	12	17	17	1.72
121160--121252	30	3.1	30	100	0	186	23	12	6	56	1.59
128686--128731	24	1.9	24	82	8	58	45	13	10	30	1.77
138893--138991	20	4.9	20	83	4	119	43	17	30	9	1.80
138883--138992	40	2.8	40	83	8	143	45	16	30	8	1.76
162320--162369	26	1.9	26	83	0	64	32	22	14	32	1.93
169403--169479	26	3.0	26	80	3	75	36	25	18	19	1.94
173193--173267	20	3.8	20	80	0	78	41	16	29	13	1.86
177720--177765	7	6.9	7	79	16	53	2	13	0	84	0.71
178733--178779	7	6.7	7	88	7	69	72	10	0	17	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
178731--178773	22	2.0	22	100	0	86	74	9	0	16	1.06
178740--178785	15	3.1	15	81	12	60	69	8	2	19	1.25
178803--178838	14	2.6	15	87	12	51	86	0	11	2	0.68
178803--178837	18	2.0	17	94	5	61	85	0	11	2	0.69
179267--179310	20	2.3	19	92	4	70	15	6	0	77	0.97
181283--181365	26	3.2	26	63	24	66	28	10	22	37	1.88
181260--181437	52	3.4	52	92	0	284	27	13	22	36	1.92
188415--188601	52	3.6	52	90	1	286	26	15	22	35	1.94
217402--217443	22	1.9	22	100	0	84	16	19	21	42	1.89
217406--217454	22	2.2	22	89	7	73	20	18	24	36	1.94
219164--219209	24	1.9	23	86	8	65	56	6	4	32	1.45
221201--221278	6	12.8	6	84	11	61	74	10	3	11	1.20
221197--221255	26	2.3	25	82	5	73	76	6	0	16	1.00
221186--221254	11	6.2	11	80	16	63	75	5	1	17	1.07
221199--221261	32	2.0	32	84	6	83	76	7	1	14	1.08
221229--221369	6	23.8	6	81	12	114	73	3	10	12	1.21
221282--221362	39	2.0	40	88	9	121	74	1	12	12	1.14
222962--223198	87	2.7	87	95	1	413	29	16	18	35	1.93
226035--226087	14	3.8	13	76	11	52	20	13	3	62	1.46
237274--237315	21	2.0	21	85	0	57	83	0	16	0	0.65
259457--259648	18	10.7	18	81	0	132	34	22	19	22	1.96
259460--259648	36	5.2	36	81	0	225	34	22	19	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
259466--259648	54	3.4	54	89	0	258	34	22	19	23	1.96
262767--262971	102	2.0	102	100	0	410	33	16	16	33	1.92
264315--264353	20	2.0	20	84	0	51	43	2	23	30	1.67
265998--266172	92	1.9	92	92	0	296	29	9	32	29	1.89
267095--267130	18	2.0	18	88	0	54	66	5	8	19	1.38
277228--277283	27	2.0	29	83	13	73	32	19	12	35	1.89
283024--283265	123	2.0	123	81	0	286	42	14	15	26	1.86
283147--286434	216	15.3	216	84	2	3879	40	14	17	27	1.88
288213--288254	22	1.9	22	85	0	57	47	11	2	38	1.53
292389--292419	7	4.6	7	96	4	55	0	9	0	90	0.46
292791--292840	18	2.6	19	75	15	50	50	2	2	46	1.24
294496--294547	18	2.9	18	77	11	61	25	15	13	46	1.82
314889--314919	15	2.1	15	100	0	62	25	32	6	35	1.82
318411--318450	21	1.9	21	100	0	80	22	2	35	40	1.68
318415--318475	26	2.3	26	86	8	79	14	3	39	42	1.62
321797--322082	142	2.0	142	93	0	491	43	14	13	29	1.83
322105--322153	24	2.0	24	92	0	80	57	6	14	22	1.59
324069--324167	24	4.1	24	97	0	180	55	8	12	24	1.63
324057--324167	48	2.3	48	92	0	186	52	9	13	25	1.69
328294--328326	2	17.0	2	93	6	59	48	0	0	51	1.00
337653--337713	27	2.3	27	88	0	86	21	18	26	34	1.96
339909--339949	17	2.3	19	79	12	50	46	19	4	29	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
348657--348700	18	2.4	19	85	11	56	9	13	4	72	1.24
350456--350778	43	7.5	43	83	2	373	31	27	15	24	1.95
355993--356362	41	9.1	41	81	3	374	17	30	19	32	1.95
355997--356352	123	2.9	124	82	5	422	17	30	19	32	1.95
360203--360255	27	2.0	27	92	0	88	16	18	24	39	1.91
361773--361826	27	2.0	27	85	0	72	24	18	18	38	1.93
361780--361834	27	2.0	27	82	0	65	27	20	16	36	1.93
366324--366425	31	3.3	31	94	2	170	32	24	2	40	1.70
370966--370998	17	1.9	17	100	0	66	6	30	3	60	1.36
375359--375394	18	1.9	19	88	5	56	75	2	13	8	1.15
382100--382141	22	1.9	22	90	0	66	42	4	2	50	1.36
389183--389240	29	2.0	29	93	0	98	43	20	3	32	1.69
396337--396408	34	2.1	34	87	5	101	9	19	0	70	1.14
396371--396423	19	2.7	20	91	5	90	7	18	0	73	1.06
398553--398648	9	10.7	9	74	8	79	33	12	28	26	1.92
398553--398650	27	3.6	27	77	0	88	34	12	27	25	1.92
407384--407514	66	2.0	66	98	0	253	45	5	35	12	1.65
409539--409582	21	2.0	22	83	12	56	79	6	11	2	1.01
411239--411366	27	4.7	27	81	0	139	37	21	14	26	1.92
413108--413540	50	8.7	50	65	12	174	37	17	18	26	1.93
412965--413540	99	5.9	99	81	5	618	38	17	18	26	1.92
428066--428238	72	2.4	68	81	10	179	32	24	13	29	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
431390--431528	29	4.9	28	81	4	134	50	10	15	23	1.75
431994--432026	3	11.0	3	100	0	66	66	0	0	33	0.92
432484--432555	34	2.1	35	84	2	92	43	15	5	36	1.70
432617--432690	38	2.1	37	82	10	91	43	14	4	37	1.65
434090--434165	36	2.1	36	87	0	107	44	15	3	35	1.65
434362--434572	45	4.7	45	93	0	332	42	16	4	36	1.69
434541--434601	29	2.1	29	87	0	86	42	18	1	37	1.60
434496--434647	74	2.1	74	84	2	198	43	15	5	35	1.70
434451--434680	119	1.9	119	87	0	334	44	15	5	34	1.69
434570--435321	45	17.7	45	75	11	572	42	16	7	33	1.76

Tables:   1   2