genome.fa.s15366.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015366.1 Kokia drynarioides strain JFW-HI SEQ_130413, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  628308

Tables:   1   2   

This is table  2  of  2  ( 222 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
434406--434907	164	3.0	163	82	5	501	43	16	5	34	1.72
434748--434817	37	2.0	34	86	10	97	44	18	4	32	1.69
434619--434957	171	2.0	172	88	0	509	44	17	5	32	1.71
434659--435310	172	3.9	170	78	9	566	42	16	7	33	1.75
435088--435224	36	3.8	36	81	2	150	42	13	7	36	1.73
434362--435449	199	5.3	199	80	10	847	43	16	6	33	1.74
435292--435418	36	3.9	34	71	23	110	44	18	5	30	1.73
435685--435859	57	3.1	57	85	2	228	50	9	17	22	1.74
435696--435880	57	3.3	57	84	2	176	51	11	15	21	1.74
435687--435880	28	6.9	28	82	4	219	51	10	15	22	1.74
446673--446703	14	2.2	14	94	0	53	48	6	6	38	1.55
446929--446988	30	2.0	30	81	12	70	48	1	6	43	1.39
453504--453594	37	2.5	37	83	0	119	35	31	21	10	1.89
453504--453635	37	3.6	36	76	2	111	34	31	21	12	1.91
453615--453651	16	2.3	16	100	0	74	29	27	27	16	1.97
453631--453810	37	4.9	37	82	0	216	31	28	24	15	1.96
453580--453688	53	2.1	53	83	0	137	32	28	22	17	1.96
453541--453713	90	1.9	90	86	0	247	32	28	22	15	1.95
453510--453763	127	2.0	127	82	1	312	31	29	24	14	1.95
455780--455902	41	3.0	41	81	7	133	18	17	37	26	1.93
455770--455920	41	3.7	39	79	8	124	19	17	35	26	1.95
457015--457117	54	1.9	54	87	0	152	27	25	25	22	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
459016--459067	27	2.0	26	88	3	77	44	17	17	21	1.87
470711--470738	2	14.0	2	100	0	56	50	0	0	50	1.00
493137--493236	36	2.8	36	85	0	137	39	15	23	23	1.92
493907--493958	21	2.5	21	81	15	63	28	11	28	30	1.92
509211--509260	21	2.5	20	81	9	66	44	4	6	46	1.47
509214--509257	21	2.1	21	91	0	70	40	2	6	50	1.42
510929--510994	19	3.5	19	69	22	66	22	10	9	57	1.60
510929--511010	38	2.2	38	93	0	137	21	12	8	57	1.61
513709--513771	31	2.0	31	84	9	83	36	3	0	60	1.13
513741--513810	28	2.5	28	75	11	70	34	1	1	62	1.13
514400--514438	18	2.2	18	95	0	69	35	51	5	7	1.53
519629--519843	50	4.3	50	72	7	175	28	23	14	33	1.94
519788--520124	149	2.2	148	81	5	381	23	19	19	37	1.94
519888--520207	149	2.1	149	82	2	374	25	19	18	37	1.94
520474--520681	49	4.2	49	77	4	204	24	22	15	38	1.92
521032--521253	112	2.0	112	90	0	345	38	13	19	28	1.89
521579--521621	12	3.6	12	90	6	61	4	13	0	81	0.84
521590--521664	9	7.9	9	76	15	53	0	21	0	78	0.75
521589--521665	23	3.2	23	70	18	68	0	20	0	79	0.74
521564--521665	48	2.1	48	83	8	127	1	21	0	76	0.88
521565--521633	30	2.3	31	82	2	77	2	18	0	78	0.88
526085--526116	16	1.9	17	93	6	57	65	0	3	31	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
527049--527087	12	3.0	13	85	7	53	28	0	0	71	0.86
527648--527705	29	2.0	29	86	6	82	22	3	22	51	1.63
530335--530587	126	2.0	126	99	0	497	33	15	13	36	1.88
531929--531958	15	2.0	15	93	0	51	30	26	10	33	1.89
535461--535489	8	3.6	8	100	0	58	65	0	0	34	0.93
535481--535664	74	2.6	72	87	5	266	44	1	6	47	1.38
535574--535619	8	5.5	8	82	7	56	58	0	0	41	0.98
535585--535633	16	3.2	16	77	8	57	53	0	2	44	1.12
535608--535695	34	2.4	38	70	21	96	38	2	9	50	1.47
535625--535756	33	3.9	34	76	7	119	38	3	8	50	1.48
537628--537661	6	5.8	6	93	3	52	73	17	8	0	1.08
539397--539465	24	3.2	21	75	18	70	27	1	2	68	1.13
540319--540365	23	2.0	23	95	0	85	38	12	10	38	1.78
540667--540819	41	3.8	40	85	1	173	21	25	14	38	1.91
540819--540925	40	2.7	40	80	2	117	26	16	16	40	1.90
541123--541231	47	2.3	47	80	9	123	28	10	20	41	1.84
551014--551061	20	2.6	18	90	6	69	70	2	2	25	1.09
551014--551098	18	4.7	17	72	15	64	67	1	3	28	1.15
551123--551201	42	1.9	40	85	12	106	60	2	1	35	1.18
551164--551198	17	2.1	17	88	0	52	65	2	0	31	1.07
551168--551241	10	7.6	10	68	22	50	63	1	2	32	1.17
551643--551697	19	2.9	19	83	2	67	29	0	3	67	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551705--551771	18	3.9	17	75	16	57	29	4	1	64	1.22
551726--551787	16	4.2	14	76	15	54	29	4	0	66	1.12
551769--551825	18	3.3	17	79	18	64	19	10	1	68	1.28
556224--556276	27	2.0	26	85	14	72	41	0	3	54	1.18
556205--556272	18	3.6	18	77	16	59	38	0	4	57	1.19
556224--556293	27	2.6	27	79	6	70	37	0	4	58	1.18
559459--559509	21	2.4	22	83	12	70	49	1	3	45	1.32
559353--559688	149	2.3	149	89	1	512	44	3	7	44	1.50
559579--559741	52	3.1	52	69	15	147	46	1	6	45	1.40
559579--559779	104	1.9	105	86	3	289	44	2	5	46	1.43
559598--559799	52	3.8	52	71	10	142	43	2	6	47	1.44
562110--562163	25	2.2	25	83	12	67	22	3	12	61	1.47
585108--585188	20	4.2	20	81	18	93	80	1	17	1	0.85
585108--585197	26	3.5	25	75	14	85	80	1	16	2	0.88
585108--585197	33	2.8	30	79	15	99	80	1	16	2	0.88
586078--586351	147	1.9	147	82	4	347	37	14	25	22	1.92
586078--586383	147	2.1	147	80	3	339	37	16	24	21	1.93
586047--586384	49	7.0	49	78	3	299	38	15	24	21	1.92
586078--586389	98	3.2	98	80	1	367	37	15	25	21	1.93
586535--587350	190	4.3	192	83	6	923	36	17	21	25	1.94
586560--587342	93	8.3	92	69	14	357	35	17	21	25	1.95
586648--587342	93	7.3	95	71	15	374	35	17	21	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
587295--587477	93	2.0	93	92	0	303	38	14	18	28	1.90
586535--587435	376	2.4	377	82	4	933	36	16	20	25	1.94
587298--587528	93	2.5	93	85	2	295	38	13	19	28	1.90
593648--593672	2	12.5	2	100	0	50	0	0	48	52	1.00
601551--601589	21	1.9	21	89	5	62	64	7	15	12	1.49
607409--607439	14	2.3	14	94	5	55	35	9	25	29	1.88
609681--609730	14	3.5	14	81	8	57	76	0	24	0	0.80
610151--610273	60	2.0	60	95	0	219	22	18	16	42	1.89
620754--620798	20	2.2	20	92	0	72	17	17	13	51	1.77
623028--623095	30	2.3	30	82	2	75	35	5	17	41	1.74
623045--623110	30	2.2	30	83	5	80	33	7	24	34	1.84
625109--625141	13	2.3	15	90	10	52	36	3	0	60	1.12
625789--625881	30	3.1	31	81	6	102	37	5	18	38	1.74
625795--625902	30	3.6	30	79	6	69	37	6	19	37	1.78

Tables:   1   2

The End!