genome.fa.s15367.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015367.1 Kokia drynarioides strain JFW-HI SEQ_130414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  471520

Tables:   1   2   

This is table  1  of  2  ( 152 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11283--11602	29	10.9	29	74	19	238	31	4	28	36	1.77
11283--11602	59	5.4	59	82	9	359	31	4	28	36	1.77
12756--12795	18	2.3	17	84	16	55	47	0	0	52	1.00
13450--13513	17	3.8	17	82	0	83	51	3	1	43	1.26
22023--22388	175	2.1	176	83	0	473	33	22	14	29	1.93
24135--24239	31	3.5	28	74	17	88	28	11	7	52	1.65
24136--24282	59	2.5	59	81	9	165	29	11	7	51	1.65
24136--24308	59	2.9	59	79	10	140	28	11	7	52	1.64
24545--24660	29	4.0	29	74	17	107	53	8	9	28	1.63
25701--25824	11	11.5	11	73	9	87	21	2	5	70	1.20
25765--25823	8	7.9	8	72	27	58	27	0	3	69	1.04
25765--25824	22	2.7	22	100	0	120	28	0	3	68	1.05
27865--27909	22	2.0	23	86	4	65	11	0	24	64	1.26
31428--31478	22	2.3	23	79	3	59	70	9	1	17	1.24
44768--44811	22	2.0	22	82	8	54	68	11	4	15	1.36
53545--53570	3	8.7	3	100	0	52	69	0	0	30	0.89
63817--63844	3	9.3	3	100	0	56	67	0	0	32	0.91
73419--73534	39	2.9	40	80	6	155	45	15	18	19	1.85
73574--73748	41	4.3	41	79	5	169	26	27	23	22	2.00
74341--74672	168	2.0	168	91	1	540	29	15	23	31	1.95
74720--74790	17	4.2	17	82	12	76	64	2	1	30	1.16
74770--74816	12	3.9	12	80	8	51	63	0	4	31	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74728--74824	44	2.2	45	80	9	108	65	1	3	29	1.14
74842--74896	6	9.5	6	73	15	53	54	1	0	43	1.10
74842--74896	17	3.2	18	85	12	71	54	1	0	43	1.10
74846--74879	11	3.0	11	91	4	50	58	0	0	41	0.98
74842--74921	29	2.9	28	78	12	85	57	2	0	40	1.12
80468--80529	19	3.2	19	74	17	56	59	4	1	33	1.28
83696--83793	42	2.3	42	85	3	135	23	8	51	17	1.72
111117--111165	16	3.3	15	81	10	57	65	0	2	32	1.04
118126--118219	45	2.1	46	86	9	131	36	3	11	48	1.56
122656--122705	20	2.4	20	83	6	55	60	6	4	30	1.39
125195--125243	25	2.0	25	91	0	80	57	0	4	38	1.18
126128--126179	26	2.1	24	82	13	61	9	17	28	44	1.80
130308--130721	29	14.2	29	76	8	290	34	29	3	32	1.74
130342--130757	59	7.1	59	81	3	437	34	28	4	32	1.77
130313--130757	88	5.1	87	74	9	336	34	28	4	32	1.76
135816--135867	23	2.3	23	82	0	59	17	25	9	48	1.77
135852--135889	18	2.1	18	90	0	58	18	21	13	47	1.82
136446--136559	60	1.9	61	85	1	158	51	9	12	26	1.70
136512--136586	30	2.5	31	84	4	91	53	12	8	26	1.65
137001--137043	23	1.9	22	90	4	68	62	0	2	34	1.08
137349--137382	17	2.0	17	88	0	50	44	2	5	47	1.42
150391--150456	27	2.5	25	78	9	60	31	4	13	50	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151834--151868	17	2.1	17	88	0	52	42	2	5	48	1.41
154091--154238	59	2.5	59	87	3	201	25	12	12	48	1.77
154129--154238	31	3.6	31	70	13	102	24	15	13	46	1.82
154425--154615	89	2.1	89	83	5	235	47	12	15	25	1.79
154496--154615	31	4.0	31	68	17	101	49	8	14	28	1.72
164207--164253	17	2.8	17	83	9	69	42	0	2	55	1.12
166178--166202	12	2.1	12	100	0	50	60	24	0	16	1.36
166190--166381	29	6.5	29	78	3	186	36	27	3	33	1.73
166190--166381	59	3.2	59	88	0	285	36	27	3	33	1.73
166221--166382	29	5.5	29	81	2	189	37	27	2	32	1.70
169752--169823	36	2.0	36	94	0	126	43	9	22	25	1.83
173985--174081	48	2.0	48	95	0	176	34	14	20	30	1.93
178032--178505	207	2.3	207	93	0	804	37	21	21	19	1.94
178882--178957	17	4.5	17	85	3	100	42	0	2	55	1.14
178909--178962	6	9.2	6	75	24	53	44	1	1	51	1.22
179010--179042	10	3.4	10	95	4	59	42	30	18	9	1.81
180591--180926	162	2.1	160	93	1	573	25	20	13	39	1.90
180966--181297	29	11.3	29	80	8	352	34	29	3	32	1.74
180966--181296	59	5.6	59	88	2	427	34	29	3	32	1.74
186815--187292	239	2.0	239	99	0	938	35	16	10	37	1.83
196261--196322	30	2.1	30	100	0	124	33	9	6	50	1.61
197270--197419	74	2.0	73	89	6	232	36	4	25	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197332--197513	103	1.8	101	85	8	264	35	2	28	32	1.72
198443--198499	12	4.8	12	84	0	69	50	7	38	3	1.46
198437--198509	24	3.0	24	81	0	74	50	5	41	2	1.40
198458--198509	12	4.3	12	82	0	59	48	5	44	1	1.38
206985--207059	27	2.8	26	70	23	66	52	2	1	44	1.23
208257--208287	16	1.9	16	93	0	53	22	0	25	51	1.48
209049--209088	17	2.3	18	86	4	55	27	15	0	57	1.38
209111--209136	2	13.0	2	100	0	52	50	0	0	50	1.00
209867--209924	22	2.6	22	83	0	71	68	15	6	8	1.36
236511--236570	31	2.0	29	87	6	84	45	15	6	33	1.72
241362--241389	6	4.7	6	100	0	56	14	53	0	32	1.41
244049--244103	26	2.1	27	89	3	85	56	1	9	32	1.41
246371--246763	165	2.4	165	89	2	583	30	17	18	33	1.94
248584--248621	2	19.0	2	100	0	76	50	0	0	50	1.00
249137--249163	14	1.9	14	100	0	54	22	14	22	40	1.90
280056--280107	15	3.5	16	75	17	58	36	5	0	57	1.23
280105--280163	22	2.7	22	94	2	102	30	3	6	59	1.40
285543--285587	20	2.2	20	84	0	54	24	6	4	64	1.37
287547--287582	2	18.0	2	100	0	72	50	0	50	0	1.00
287688--287737	12	3.9	13	84	12	68	58	4	38	0	1.17
293510--294079	246	2.3	245	80	4	628	35	9	9	45	1.69
297385--297748	181	2.0	183	92	3	610	25	14	17	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
312557--312597	20	2.1	19	90	4	64	63	0	36	0	0.95
312778--312802	12	2.1	12	100	0	50	48	0	0	52	1.00
312937--312979	21	2.1	21	86	4	61	25	2	13	58	1.48
313238--313287	16	3.2	16	71	21	52	60	6	0	34	1.21
314592--314676	43	2.0	43	83	4	109	32	9	10	47	1.70
315243--315379	45	3.0	45	86	2	159	31	28	20	19	1.97
315666--315720	28	2.0	28	88	0	83	49	27	5	18	1.69
317462--317626	81	2.0	81	98	0	321	24	26	13	35	1.93
318857--318909	20	2.6	19	96	3	79	0	43	0	56	0.99
318857--318926	21	3.4	20	90	5	104	1	40	0	58	1.07
319421--319702	140	2.0	141	98	0	548	31	11	13	43	1.79
322586--322642	28	2.0	28	82	6	69	49	0	0	50	1.00
323594--323633	3	13.3	3	100	0	80	35	0	0	65	0.93
324586--324615	8	3.8	8	90	0	51	86	0	3	10	0.67
329535--329581	24	1.9	25	87	12	71	65	0	0	34	0.93
331976--332062	28	2.9	30	72	18	81	49	0	2	48	1.13
331989--332076	28	3.3	27	75	10	83	52	1	2	44	1.21
339913--340320	30	13.7	30	75	12	319	31	4	28	35	1.78
339954--340064	58	1.9	57	81	7	134	29	8	27	34	1.86
340061--340320	59	4.4	59	88	1	333	31	3	28	36	1.75
341360--341428	21	3.3	21	78	8	77	43	4	4	47	1.42
342161--342223	17	3.6	17	83	10	83	52	3	1	42	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342158--342223	6	11.3	6	71	18	50	51	3	1	43	1.26
342703--342747	22	2.0	22	87	8	65	17	2	13	66	1.34
358673--358826	76	2.0	76	100	0	308	44	25	6	23	1.77
365207--365243	18	2.1	18	100	0	74	27	27	0	45	1.54
368038--368145	36	3.0	36	97	0	207	28	12	19	38	1.89
370519--370555	18	2.1	18	94	0	65	24	16	5	54	1.63
373874--373900	5	5.4	5	100	0	54	0	0	18	81	0.69
374279--374345	28	2.4	28	82	2	71	28	2	5	62	1.33
374309--374368	29	2.0	29	81	9	68	28	6	6	58	1.49
374439--374468	2	15.0	2	100	0	60	50	0	0	50	1.00

Tables:   1   2