Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015367.1 Kokia drynarioides strain JFW-HI SEQ_130414, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  471520

Tables:   1   2   

This is table  2  of  2  ( 152 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
383589--383622
16
2.2
15
89
5
50
41
0
0
58
0.98
399922--399949
6
4.7
6
100
0
56
17
28
17
35
1.93
402627--402694
21
3.2
21
67
29
63
52
5
4
36
1.46
402608--402698
42
2.2
42
98
2
175
52
7
4
35
1.50
403106--403131
4
6.5
4
100
0
52
50
0
0
50
1.00
404724--404997
90
3.0
90
76
4
300
54
4
31
9
1.52
408248--408277
2
15.0
2
100
0
60
50
0
0
50
1.00
411755--411821
33
2.0
33
97
0
125
34
17
16
31
1.93
411894--411940
22
2.2
22
81
11
53
27
25
10
36
1.89
412520--412559
20
2.0
21
90
5
64
45
0
0
55
0.99
417623--417667
23
1.9
24
86
13
67
62
0
0
37
0.96
418951--418979
3
9.7
3
100
0
58
0
0
65
34
0.93
421338--421379
22
2.0
22
85
4
59
30
4
19
45
1.71
425416--425489
21
3.3
22
77
7
69
35
0
17
47
1.48
425444--425489
22
2.0
24
87
8
69
43
0
13
43
1.43
428848--428897
20
2.5
20
90
0
73
26
36
10
28
1.88
429112--429169
20
2.9
19
75
7
62
36
24
12
27
1.91
431973--432025
20
2.7
20
90
0
79
32
30
7
30
1.85
433068--433460
150
2.6
149
82
5
486
35
11
22
30
1.90
433840--433899
30
2.0
31
86
3
86
35
0
10
55
1.34
442305--442447
74
2.0
72
87
2
205
35
15
23
25
1.94
443815--443858
22
2.0
23
82
13
56
56
0
2
40
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
445631--445674
22
1.9
22
86
9
61
52
0
2
45
1.13
448130--448154
3
8.3
3
100
0
50
64
0
36
0
0.94
449494--449536
23
1.9
23
90
4
70
58
6
2
32
1.38
452931--452964
7
4.7
7
96
3
59
88
0
11
0
0.52
466434--466472
16
2.4
17
83
12
55
30
0
0
69
0.89
467093--467135
18
2.4
18
80
7
52
51
0
2
46
1.13
470336--470383
14
3.5
14
80
5
62
37
25
20
16
1.93
470330--470383
27
2.0
27
88
0
81
38
22
20
18
1.93
470419--470450
16
2.1
15
94
5
55
9
6
31
53
1.58
470453--470505
23
2.3
23
83
6
63
18
3
35
41
1.69

Tables:   1   2

The End!