genome.fa.s15372.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015372.1 Kokia drynarioides strain JFW-HI SEQ_130419, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  487716

Tables:   1   2   

This is table  1  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2061--2095	18	2.0	18	88	5	54	57	5	2	34	1.37
6135--6180	24	1.9	23	86	8	65	56	6	4	32	1.45
10794--10819	2	13.0	2	100	0	52	50	0	0	50	1.00
11065--11119	28	2.0	27	82	3	65	50	1	9	38	1.45
18785--18810	13	2.0	13	100	0	52	30	15	0	53	1.42
27008--27043	17	2.3	17	86	13	51	41	2	0	55	1.14
27539--27592	17	2.8	20	78	18	69	62	5	0	31	1.18
39704--39793	31	3.0	31	83	6	105	47	16	13	22	1.81
41835--41872	19	2.1	19	90	5	60	36	5	2	55	1.37
46484--46516	9	3.8	9	84	8	50	21	0	0	78	0.75
46477--46665	63	3.0	62	83	6	220	41	2	2	53	1.24
46477--46661	67	2.8	66	85	9	231	41	2	2	54	1.24
49481--50431	475	2.0	475	96	0	1758	27	21	17	32	1.96
56028--56079	16	3.2	16	73	10	52	21	3	15	59	1.52
59965--60008	21	2.0	23	86	8	65	25	29	2	43	1.67
85445--85520	28	2.6	28	83	6	89	31	3	3	60	1.33
91315--91353	17	2.3	17	86	0	51	17	12	23	46	1.83
91882--91977	25	3.8	25	86	6	106	40	21	14	22	1.90
105741--105775	16	2.1	18	89	10	56	51	2	0	45	1.16
106622--106667	23	2.0	22	83	4	56	36	0	2	60	1.09
108560--108653	47	2.0	47	95	0	170	32	24	9	32	1.88
109805--109870	6	10.8	6	71	9	53	37	3	1	57	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110624--110673	21	2.3	22	86	3	75	58	8	8	26	1.54
111850--111952	29	3.6	29	86	5	145	35	29	1	33	1.69
113149--113183	16	2.1	18	89	10	56	51	2	0	45	1.16
114030--114075	23	2.0	22	83	4	56	36	0	2	60	1.09
115968--116061	47	2.0	47	95	0	170	32	24	9	32	1.88
117213--117278	6	10.8	6	71	9	53	37	3	1	57	1.23
118032--118081	21	2.3	22	86	3	75	58	8	8	26	1.54
119258--119631	29	12.8	29	82	6	407	33	30	3	32	1.75
119246--119630	88	4.4	87	83	7	431	32	30	3	32	1.75
119258--119655	59	6.8	59	87	3	468	33	29	3	33	1.75
119572--119665	29	3.2	29	68	11	73	31	26	6	35	1.82
129718--129751	2	17.0	2	87	0	50	55	0	0	44	0.99
134164--134201	20	2.0	20	85	15	53	31	2	5	60	1.33
136578--136624	19	2.4	18	83	13	58	48	0	0	51	1.00
136584--136624	19	2.0	21	90	9	68	43	0	0	56	0.99
137432--137472	11	3.7	11	86	0	55	51	0	0	48	1.00
137432--137473	22	1.9	22	90	0	66	50	0	0	50	1.00
144296--144321	12	2.2	12	100	0	52	0	15	0	84	0.62
145766--145939	39	4.5	39	77	7	147	25	17	18	37	1.93
150860--150899	12	3.3	12	100	0	80	15	0	0	85	0.61
150860--150908	24	2.0	24	84	0	62	20	0	4	75	0.96
151451--151484	15	2.3	15	94	0	59	29	0	0	70	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
151438--151484	15	3.1	15	82	11	51	29	0	4	65	1.11
151899--151953	16	3.7	15	70	15	51	45	0	3	50	1.19
152079--152110	15	2.1	16	94	5	57	53	0	0	46	1.00
179374--179416	17	2.4	19	81	18	56	2	23	0	74	0.93
179366--179417	24	2.2	23	81	18	63	1	21	0	76	0.87
180013--180047	17	2.1	17	89	5	54	54	14	11	20	1.70
185927--186063	51	2.7	52	78	8	147	31	15	24	29	1.95
185955--186199	122	2.0	122	91	0	400	36	13	21	28	1.91
186134--186311	61	3.0	60	86	3	225	37	14	18	29	1.91
188660--188942	51	5.5	51	83	2	338	27	21	16	33	1.95
200077--200217	51	2.8	51	94	0	246	32	14	25	27	1.94
200181--200383	61	3.5	57	84	9	197	32	15	23	29	1.95
200220--200390	61	2.8	60	88	4	247	34	14	22	28	1.93
201025--201100	21	3.6	21	80	0	80	34	14	19	31	1.92
207387--207411	11	2.3	11	100	0	50	44	16	0	40	1.47
213932--213978	5	9.4	5	100	0	94	40	0	0	59	0.97
221214--221248	2	18.0	2	94	5	63	48	0	0	51	1.00
224077--224139	24	2.6	24	82	0	81	25	12	9	52	1.69
227890--227963	24	3.1	24	80	0	94	31	25	14	28	1.95
228041--228070	14	2.1	15	93	6	53	36	10	0	53	1.35
230443--230492	17	2.8	18	80	17	52	44	34	14	8	1.74
231009--231060	23	2.3	23	83	6	61	26	5	5	61	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
231086--231124	20	1.9	21	85	15	55	53	0	2	43	1.14
231777--231827	25	2.0	25	81	7	59	29	13	5	50	1.65
232693--232731	18	2.2	18	86	9	53	33	7	23	35	1.83
233333--233363	15	2.1	15	93	0	53	51	25	9	12	1.70
235539--235563	12	2.1	12	100	0	50	68	0	16	16	1.22
237829--237954	41	3.1	41	83	3	148	15	18	20	45	1.86
237840--237954	40	2.9	41	84	2	135	16	19	19	45	1.86
237956--238227	41	6.6	42	73	7	148	17	25	20	36	1.94
238753--238812	28	2.1	28	87	6	86	1	18	1	78	0.92
238758--238812	17	3.2	17	73	19	51	1	18	1	78	0.94
238752--238812	7	8.7	7	77	16	56	1	18	1	78	0.91
240683--240927	52	4.7	51	80	2	238	35	25	13	26	1.92
242618--242658	3	13.7	3	100	0	82	31	0	0	68	0.90
271794--271836	21	2.0	21	90	4	68	0	20	4	74	1.00
271815--271846	15	2.1	15	94	0	55	0	25	9	65	1.22
272755--272784	15	2.0	15	93	0	51	0	16	6	76	0.99
279030--279072	22	1.9	23	85	4	61	51	18	20	9	1.74
279030--279099	23	3.0	23	81	4	61	51	18	20	10	1.74
282833--282863	12	2.6	12	94	0	53	29	16	25	29	1.96
283536--283599	6	11.0	6	76	6	60	50	1	1	46	1.20
283536--283610	17	4.4	17	79	3	87	52	2	1	44	1.23
283567--283599	11	2.8	12	86	9	50	51	3	0	45	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
283554--283620	23	2.9	23	76	12	66	53	2	2	40	1.31
283538--283593	29	1.9	29	85	7	78	51	1	1	44	1.22
283536--283599	29	2.2	29	77	5	76	50	1	1	46	1.20
293394--293438	20	2.3	20	84	3	56	17	0	6	75	1.01
295541--295573	4	8.2	4	100	0	66	48	27	0	24	1.51
299764--299819	3	18.7	3	75	14	53	5	25	33	35	1.79
299767--299819	21	2.5	21	96	0	97	5	24	33	35	1.79
302281--302317	3	12.0	3	88	5	56	0	29	35	35	1.58
306297--306333	19	1.9	19	88	0	56	24	5	29	40	1.77
316282--316323	5	8.4	5	89	0	66	19	40	4	35	1.72
318201--318246	24	1.9	24	91	8	76	65	0	0	34	0.93
318188--318265	27	2.8	26	78	7	84	67	1	0	30	0.98
339025--339063	21	1.9	20	85	15	53	33	12	0	53	1.39
346116--346153	17	2.2	18	90	4	60	26	5	5	63	1.37
346248--346303	22	2.5	22	97	0	103	32	19	17	30	1.95
370874--371093	88	2.5	89	80	11	263	37	17	10	34	1.85
371200--371268	19	3.5	19	72	21	54	62	0	1	36	1.04
371187--371327	10	14.6	9	69	18	63	64	0	2	32	1.08
371212--371348	62	2.2	62	81	12	149	64	0	2	32	1.14
371202--371328	21	6.2	20	70	18	75	62	0	3	33	1.11
371273--371373	10	10.2	10	71	12	75	67	0	1	29	1.08
371272--371348	11	7.4	11	74	14	56	67	1	1	29	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
371701--371738	16	2.4	16	86	4	51	39	0	0	60	0.97
380211--380251	21	2.0	21	95	0	73	0	48	19	31	1.49
380356--380413	30	1.9	30	100	0	116	27	25	13	32	1.94
384548--384838	41	7.0	41	80	3	303	23	21	25	29	1.99
384548--384898	82	4.1	83	76	9	307	22	21	25	30	1.99
384789--384939	49	3.0	48	80	10	162	21	22	22	33	1.98
384796--384951	52	3.1	52	77	6	158	21	19	23	35	1.96
385641--385688	20	2.5	18	80	12	51	33	2	2	62	1.18
390439--390555	57	2.1	57	96	0	216	35	17	9	38	1.82
397058--397089	6	5.2	6	96	3	55	34	0	65	0	0.93

Tables:   1   2