genome.fa.s15373.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015373.1 Kokia drynarioides strain JFW-HI SEQ_130420, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  603110

Tables:   1   2   3   

This is table  2  of  3  ( 241 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
308711--308741	15	2.1	15	93	0	53	77	0	0	22	0.77
308841--308888	18	2.9	16	79	14	53	22	0	2	75	0.91
308946--309029	29	2.9	29	80	5	82	39	0	3	57	1.16
308961--309053	19	5.1	18	68	12	57	35	0	3	61	1.12
311929--311979	22	2.3	22	82	3	57	33	25	9	31	1.88
312182--312226	20	2.2	21	88	4	65	31	6	20	42	1.77
312169--312239	27	2.6	28	79	4	81	26	5	26	40	1.78
312182--312236	21	2.7	20	85	2	65	30	7	21	40	1.81
315768--315855	45	2.0	44	88	2	131	31	7	18	42	1.79
320641--320676	12	3.1	11	88	11	54	27	0	2	69	1.02
321525--321550	12	2.2	12	100	0	52	30	0	26	42	1.56
323145--323236	43	2.1	43	97	0	175	35	31	8	23	1.86
325945--326139	68	3.0	66	74	13	213	41	2	5	51	1.37
326014--326130	58	2.0	58	88	8	173	40	1	5	52	1.33
332397--332449	27	2.0	26	82	14	63	43	0	7	49	1.31
335760--335793	17	2.0	17	88	11	52	61	38	0	0	0.96
338229--338276	23	2.1	23	100	0	96	12	29	4	54	1.56
338229--338266	12	3.2	12	77	7	51	13	28	5	52	1.61
349632--349675	19	2.3	19	88	4	61	36	2	2	59	1.23
349629--349668	19	2.0	20	95	4	73	35	2	0	62	1.09
350226--350268	22	1.9	23	85	4	61	67	4	2	25	1.22
350700--350726	13	2.1	13	100	0	54	92	0	7	0	0.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353973--354047	15	4.3	17	71	17	64	21	1	6	70	1.17
354003--354137	3	46.3	3	70	11	59	28	3	5	62	1.36
354003--354070	28	2.4	27	78	11	75	29	2	5	61	1.34
354004--354073	26	2.5	27	80	11	72	30	2	5	61	1.34
354003--354089	29	3.0	28	80	11	88	29	3	4	62	1.32
354004--354103	29	3.6	29	77	13	77	28	4	5	63	1.34
356163--356205	20	2.2	20	91	0	68	48	2	11	37	1.52
369872--370063	53	3.7	52	88	4	280	28	16	20	34	1.94
373306--373365	20	3.0	20	77	0	66	35	6	10	48	1.63
376296--376326	7	4.4	7	100	0	62	12	54	16	16	1.71
379016--379045	4	7.5	4	100	0	60	76	0	23	0	0.78
379266--379290	2	12.5	2	100	0	50	52	0	48	0	1.00
389378--389423	25	2.0	22	83	12	56	39	10	8	41	1.71
392409--392648	52	4.6	52	78	2	167	27	14	26	31	1.95
392416--392645	104	2.2	104	80	3	248	26	14	26	31	1.95
399599--399788	52	3.7	52	85	0	245	29	14	24	31	1.95
399599--399838	52	4.6	52	80	3	241	27	14	25	32	1.94
401251--401286	15	2.4	15	95	0	63	44	0	25	30	1.54
402490--402531	20	2.1	20	90	0	66	30	7	28	33	1.84
406858--406889	3	10.7	3	100	0	64	31	0	0	68	0.90
409493--409536	22	2.0	21	83	12	54	29	4	9	56	1.50
411266--411329	30	2.1	30	82	5	76	39	12	6	42	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417008--417114	52	2.1	52	98	0	205	23	13	14	48	1.79
423675--423990	30	10.8	29	81	6	273	36	26	2	34	1.69
423713--424007	28	10.2	28	79	11	148	35	27	1	35	1.67
423725--424007	58	4.9	57	82	7	159	36	27	1	34	1.66
433355--433381	3	9.0	3	100	0	54	66	0	33	0	0.92
435640--436036	78	5.1	78	82	3	397	25	30	18	25	1.98
435640--436116	78	6.1	78	81	5	396	25	29	19	25	1.98
435693--436154	117	4.0	117	73	13	335	25	29	19	25	1.98
435643--436063	156	2.7	154	79	2	484	25	30	18	25	1.98
436009--436239	78	3.0	78	86	2	313	25	29	19	25	1.98
435687--436231	39	14.0	39	70	9	263	25	29	19	25	1.98
436898--436946	16	2.9	17	81	6	64	42	0	0	57	0.99
438719--438754	18	2.1	18	89	5	56	41	0	25	33	1.55
439043--439079	18	2.1	18	89	0	56	48	0	27	24	1.51
446130--446165	18	2.1	18	89	5	56	41	0	25	33	1.55
446462--446498	18	2.1	18	89	0	56	48	0	27	24	1.51
447284--447319	8	4.8	8	86	13	58	38	0	11	50	1.38
447286--447318	14	2.4	14	100	0	66	36	0	12	51	1.39
448373--448633	30	8.8	29	79	9	249	39	27	0	32	1.60
452626--452716	39	2.3	39	82	0	101	28	17	18	35	1.94
452961--453016	29	1.9	29	82	7	69	26	33	19	19	1.96
454443--454477	18	1.9	18	88	0	52	28	0	25	45	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457882--457974	30	3.1	30	75	6	100	39	21	2	36	1.66
457889--457984	30	3.2	29	73	10	86	38	20	2	38	1.65
457972--458042	29	2.5	28	80	8	72	39	26	1	32	1.65
457996--458063	29	2.3	30	84	2	93	35	25	4	35	1.76
458348--458529	96	1.9	96	87	2	267	27	19	14	38	1.91
464820--464889	34	2.1	34	97	0	131	50	15	11	22	1.76
465542--465617	39	2.0	38	86	2	107	56	11	19	11	1.66
466314--466683	50	7.6	49	71	15	232	35	14	32	16	1.90
466456--466687	99	2.3	99	84	4	317	35	16	33	15	1.90
466665--466718	28	1.9	28	81	7	65	25	24	33	16	1.96
466566--466807	127	1.9	127	83	3	317	31	16	33	18	1.93
466690--467008	49	6.5	49	77	2	246	35	19	29	15	1.92
469394--469577	97	1.9	97	89	0	287	27	17	14	39	1.89
477712--477761	23	2.1	25	82	10	61	62	8	4	26	1.41
478115--478152	16	2.4	16	86	4	51	71	2	10	15	1.25
478146--478198	14	3.8	14	90	7	81	77	1	1	18	0.96
478251--478294	16	2.8	16	82	3	54	75	6	2	15	1.12
478526--478579	24	2.2	25	90	3	83	44	7	12	35	1.71
479284--480038	49	15.5	49	74	6	543	20	18	15	45	1.86
479279--480033	98	7.8	98	81	4	697	20	17	16	45	1.86
479281--479952	289	2.3	291	83	2	821	20	17	15	45	1.85
486732--486776	21	2.1	21	83	0	54	20	11	24	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490194--490275	37	2.3	35	87	4	110	56	3	3	36	1.35
490185--490275	17	5.2	17	80	10	85	56	3	3	37	1.32
499008--499086	38	2.1	39	86	6	110	34	5	7	53	1.51
516622--516646	2	12.5	2	100	0	50	48	52	0	0	1.00
517072--517101	7	4.3	7	91	0	51	53	0	3	43	1.17
518857--519017	85	1.9	86	83	6	211	32	19	19	27	1.97
520973--521487	108	4.8	107	82	2	568	24	19	21	35	1.96
526607--527011	153	2.7	149	87	6	588	46	10	2	41	1.50
526647--527002	52	7.1	52	66	17	189	46	8	2	42	1.47
526858--526902	21	2.0	22	84	16	58	48	4	0	46	1.22
527073--527167	3	31.7	3	93	0	127	66	26	1	6	1.22
528983--529059	21	3.7	21	85	0	100	27	14	24	33	1.94
530820--530862	12	3.6	12	93	0	68	39	34	18	6	1.78
531641--531684	21	2.1	21	95	0	79	20	15	29	34	1.94
531903--531954	20	2.6	20	84	0	59	71	0	26	1	0.97
532645--532674	3	10.0	3	100	0	60	0	33	0	66	0.92
533322--533346	13	1.9	13	100	0	50	56	8	0	36	1.29
536735--536770	3	12.3	3	94	5	65	33	0	33	33	1.58
543259--543429	87	2.0	87	96	0	315	41	22	15	20	1.90
547358--547518	31	5.4	31	68	15	115	25	19	11	42	1.85
547358--547529	59	2.9	59	86	6	224	23	19	11	45	1.82
548906--548953	24	2.0	24	100	0	96	29	33	8	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
551787--551834	22	2.2	20	85	10	60	33	2	2	62	1.18
551793--551834	22	2.0	22	90	4	68	33	2	2	61	1.21
565727--565834	44	2.5	44	93	0	180	35	15	17	31	1.92
585405--585539	52	2.6	52	96	0	243	34	24	14	25	1.94
586512--586544	16	2.1	16	94	0	57	24	18	3	54	1.57
595117--595150	18	1.9	18	88	5	52	35	0	5	58	1.22
596876--596913	19	2.0	19	100	0	76	26	10	15	47	1.78
601916--602013	35	2.8	36	87	3	144	48	12	16	22	1.79
601949--602025	35	2.2	35	83	6	93	50	12	15	20	1.77
602099--602168	36	1.9	36	85	0	95	47	15	15	21	1.83

Tables:   1   2   3