genome.fa.s15380.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01015380.1 Kokia drynarioides strain JFW-HI SEQ_130427, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  614474

Tables:   1   2   

This is table  1  of  2  ( 156 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7711--7776	31	2.2	30	83	5	80	33	10	13	42	1.79
7734--7791	29	2.0	29	83	6	73	32	10	12	44	1.75
7962--8020	31	2.0	30	86	6	84	47	13	5	33	1.65
7957--8023	31	2.3	27	78	14	80	44	11	5	37	1.66
8236--8276	20	2.2	18	86	8	55	58	0	4	36	1.20
8348--8383	2	18.0	2	100	0	72	50	0	0	50	1.00
9103--9136	6	5.5	6	96	3	59	20	17	29	32	1.96
12013--12055	19	2.3	19	84	8	52	58	2	0	39	1.11
15932--15970	6	6.5	6	87	0	51	23	30	0	46	1.53
28419--28444	5	5.2	5	100	0	52	38	0	0	61	0.96
30858--31066	104	2.0	104	97	0	391	22	16	29	32	1.96
31727--31811	21	4.0	21	72	6	55	42	4	21	31	1.73
32310--32340	15	2.1	15	93	0	53	77	0	0	22	0.77
34656--34702	3	15.7	3	100	0	94	65	0	0	34	0.93
44892--44946	21	2.7	20	75	8	56	60	9	9	21	1.55
44934--45238	55	5.4	55	77	6	270	48	16	10	24	1.77
44934--45231	116	2.7	110	77	4	265	48	16	10	24	1.77
51963--52031	29	2.4	29	82	0	84	42	1	8	47	1.43
54362--54392	5	6.2	5	92	0	53	19	19	22	38	1.93
84460--84495	16	2.1	16	90	10	54	44	2	0	52	1.15
103278--103325	21	2.3	21	86	10	64	54	0	6	39	1.26
104010--104064	24	2.2	25	78	12	60	52	20	3	23	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116517--116576	20	3.0	20	79	16	70	40	10	8	41	1.69
119902--119952	21	2.4	21	96	0	93	50	27	15	5	1.67
131440--131594	24	6.5	24	81	3	177	27	24	16	31	1.96
131440--131594	48	3.2	48	87	3	222	27	24	16	31	1.96
131425--131594	72	2.4	72	83	2	207	27	24	15	32	1.95
131627--131668	21	2.0	21	100	0	84	42	19	4	33	1.72
141696--141724	6	4.8	6	100	0	58	17	0	82	0	0.66
146584--146618	3	11.7	3	93	0	61	65	0	2	31	1.07
147226--147250	6	4.2	6	100	0	50	0	16	16	68	1.22
154264--154302	6	6.5	6	84	0	51	2	33	17	46	1.62
162040--162084	24	2.0	24	82	8	58	8	20	20	51	1.73
163757--163789	5	6.6	5	96	0	57	42	54	3	0	1.15
178903--178960	27	2.2	27	84	9	75	29	3	5	62	1.33
180495--180688	30	6.5	30	79	8	153	37	2	23	37	1.69
180495--180679	61	3.1	59	80	6	185	37	2	23	35	1.69
181628--181672	21	2.1	21	84	8	56	60	2	2	35	1.22
182164--182201	18	2.2	18	95	4	69	60	0	0	39	0.97
182643--183215	39	14.7	39	73	13	212	27	19	29	23	1.98
182582--183293	78	9.1	78	78	2	473	26	18	29	24	1.98
182620--183293	117	5.8	115	79	5	579	26	18	30	24	1.98
182732--183295	39	14.5	39	72	9	364	26	19	30	23	1.98
191389--191438	25	2.0	25	100	0	100	20	32	16	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
194984--195035	24	2.2	24	83	13	63	61	7	9	21	1.51
195182--195371	30	6.4	30	81	5	181	36	2	24	36	1.69
195182--195363	59	3.1	58	77	6	204	36	2	24	35	1.70
196270--196314	21	2.1	21	84	8	56	60	2	2	35	1.22
196267--196329	25	2.5	24	78	17	65	61	1	1	34	1.15
198208--198240	6	5.5	6	100	0	66	33	15	51	0	1.43
200594--200651	16	3.6	16	72	11	55	34	5	13	46	1.66
201434--201558	62	2.0	62	90	0	196	36	7	31	25	1.83
201804--201890	45	2.0	45	84	11	117	24	3	3	68	1.20
201840--201919	18	4.4	18	69	19	67	22	2	3	71	1.14
201840--201919	37	2.2	35	80	8	88	22	2	3	71	1.14
203493--203605	58	1.9	58	98	0	217	43	15	11	29	1.82
215340--215396	13	4.3	13	74	12	53	26	1	36	35	1.67
215691--215747	21	2.7	21	83	0	69	21	10	26	42	1.85
217752--217796	24	1.9	23	90	4	72	40	13	15	31	1.86
217716--217803	23	3.8	23	77	4	88	39	17	13	29	1.88
228187--228569	191	2.0	192	92	0	633	20	14	20	44	1.86
234494--234527	17	1.9	18	94	5	61	11	0	8	79	0.94
245452--245658	104	2.0	103	80	2	236	41	7	15	35	1.77
245780--246055	140	2.0	139	91	2	446	36	10	8	44	1.69
246946--246978	15	2.1	16	88	5	50	39	15	0	45	1.46
255650--255701	26	2.0	26	85	7	70	26	3	5	63	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
258055--258105	24	2.1	24	96	0	93	56	9	11	21	1.63
258493--258540	20	2.4	21	80	13	57	68	6	0	25	1.12
260226--260289	31	2.1	31	96	0	119	35	3	12	48	1.57
260539--260579	21	1.9	21	90	5	64	75	2	0	21	0.92
263101--263261	80	2.0	80	98	0	313	31	18	16	33	1.94
272745--272809	29	2.2	30	78	13	73	53	6	12	27	1.61
273499--273549	24	2.1	25	88	3	77	64	7	0	27	1.21
273535--273581	25	1.9	24	83	12	60	55	8	2	34	1.42
274583--274652	31	2.3	31	85	7	90	40	14	7	38	1.73
278877--279263	213	1.8	206	86	4	551	28	10	11	48	1.73
284074--284162	46	2.0	45	82	6	108	65	14	4	15	1.43
284136--284184	21	2.2	21	89	7	71	71	18	2	8	1.21
284133--284185	23	2.3	24	84	12	76	71	18	1	7	1.19
284737--284806	33	2.2	33	82	12	83	54	1	4	40	1.29
294238--294277	21	1.9	21	89	0	62	57	5	5	32	1.42
295003--295051	16	3.2	16	77	11	66	34	4	4	57	1.37
303313--303375	21	3.0	21	81	4	74	33	20	14	31	1.92
303338--303391	21	2.6	21	90	0	81	29	24	11	35	1.90
304090--304380	52	5.6	52	87	3	406	36	21	14	27	1.92
311810--311849	13	2.9	14	82	17	57	42	0	0	57	0.98
314661--314748	41	2.1	41	97	0	167	54	7	27	10	1.62
320619--321230	312	2.0	309	89	1	938	18	25	16	40	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
330086--330128	20	2.2	20	91	0	68	37	30	4	27	1.77
342742--343368	137	4.6	137	91	2	936	30	18	18	33	1.94
350379--350403	2	12.5	2	100	0	50	52	0	0	48	1.00
356941--357051	23	4.8	23	85	0	159	41	25	19	13	1.88
360884--360920	10	3.5	11	82	14	51	56	5	0	37	1.22
360860--360925	20	3.5	19	76	8	64	60	3	0	36	1.12
360860--360943	20	4.4	18	72	14	62	58	3	0	38	1.16
370663--370726	21	3.0	21	81	6	65	37	1	1	59	1.16
378304--378647	29	11.9	28	75	11	232	36	2	23	37	1.70
378237--378578	58	5.9	57	77	9	268	35	5	22	36	1.77
378305--378637	58	5.8	58	80	9	279	36	3	23	37	1.70
378419--378658	30	8.2	30	80	6	233	37	1	24	37	1.66
379793--379833	3	13.3	3	89	5	64	60	0	2	36	1.10
379832--379880	3	16.3	3	91	0	80	34	4	0	61	1.15
380526--380580	17	3.2	17	82	7	67	52	1	3	41	1.29
381056--381399	161	2.1	161	89	0	535	22	23	19	34	1.96
380905--381609	370	1.9	370	88	0	1050	23	23	18	35	1.96
381215--381748	209	2.5	206	85	3	692	22	22	18	36	1.95
383898--383946	3	16.3	3	100	0	98	0	32	0	67	0.91
390960--391042	19	4.4	19	66	14	64	39	13	9	37	1.77
394364--394388	7	3.6	7	100	0	50	28	0	72	0	0.86
403590--403618	3	9.7	3	100	0	58	65	0	0	34	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416089--416168	28	2.7	29	71	24	78	60	1	0	38	1.05
436953--436989	17	2.1	18	90	5	58	21	8	0	70	1.13
438201--438248	15	3.1	15	78	18	53	47	0	0	52	1.00
438198--438240	18	2.4	18	92	7	70	48	0	0	51	1.00
440469--440515	16	2.9	17	79	17	55	57	0	2	40	1.11
440526--440550	11	2.3	11	100	0	50	52	8	0	40	1.31
443044--443083	19	2.0	20	85	4	55	57	0	5	37	1.21
444879--444929	26	1.9	27	84	4	68	39	3	15	41	1.66
451282--451383	28	3.5	28	76	12	100	64	2	1	30	1.19
451320--451363	22	2.0	21	91	4	70	68	4	0	27	1.09

Tables:   1   2