genome.fa.s2737.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01002737.1 Kokia drynarioides strain JFW-HI SEQ_115041, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73847

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2501--2583	29	2.9	26	73	18	67	44	7	10	37	1.67
7214--7409	86	2.3	83	86	5	270	45	21	10	22	1.81
11365--11442	30	2.6	30	77	4	86	43	23	11	21	1.85
28055--28084	4	7.5	4	92	0	51	23	3	26	46	1.68
28055--28088	12	2.8	12	95	0	59	23	5	26	44	1.76
33817--33850	5	6.8	5	100	0	68	20	20	17	41	1.91
35416--35485	33	2.1	33	89	0	104	44	40	0	15	1.47
35529--35578	26	1.9	26	87	0	73	42	30	0	28	1.56
35577--35615	18	2.2	18	85	0	51	41	46	0	12	1.42
35540--35664	19	6.3	19	70	17	69	43	38	0	18	1.50
35619--35684	20	3.4	19	77	8	71	46	37	1	13	1.53
35687--35856	7	24.9	7	65	13	59	45	33	0	20	1.55
35683--35765	27	3.1	27	77	5	71	50	27	1	20	1.56
35714--36001	19	14.6	20	66	20	83	44	35	0	19	1.54
35892--35994	39	2.6	39	80	6	118	43	36	0	19	1.51
35957--36121	7	24.3	7	69	15	78	45	30	0	24	1.53
36004--36090	31	2.8	31	94	1	147	45	27	0	26	1.54
35685--36121	13	32.9	14	67	18	104	45	32	0	21	1.55
36705--36749	11	4.3	11	76	21	51	37	0	2	60	1.09
37980--38382	58	7.0	57	79	9	279	36	27	1	33	1.69
37956--38396	29	15.4	28	75	11	252	36	27	2	33	1.71
39032--39056	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47617--47700	42	2.0	42	97	0	159	32	14	20	33	1.92
51164--51209	17	2.7	18	93	6	78	36	0	10	52	1.37
51894--51965	27	2.7	27	85	8	87	56	5	4	33	1.41
51913--51962	18	2.8	18	76	11	57	60	6	2	32	1.32
52320--52356	19	2.0	19	89	5	58	37	0	45	16	1.47
52899--53274	119	3.2	117	85	6	431	33	25	2	38	1.69
52899--53211	58	5.3	59	85	5	400	33	25	1	38	1.66
52899--53269	59	6.3	57	81	8	354	33	25	2	39	1.68
52899--53274	178	2.1	177	83	6	476	33	25	2	38	1.69
53404--53626	28	7.8	28	71	21	160	31	28	5	34	1.80
53390--53619	59	3.9	58	79	12	224	33	27	4	34	1.78
61320--61425	23	4.5	23	84	4	124	10	19	22	47	1.80
73804--73831	13	2.2	13	100	0	56	60	0	25	14	1.34

Tables:   1

The End!