genome.fa.s3011.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003011.1 Kokia drynarioides strain JFW-HI SEQ_115519, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  423923

Tables:   1   2   

This is table  2  of  2  ( 153 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316487--316519	6	5.5	6	86	13	50	81	0	18	0	0.68
316481--316519	12	3.5	11	83	16	53	82	0	17	0	0.68
316481--316520	13	3.4	12	87	12	57	82	0	17	0	0.67
319253--319300	22	2.2	22	100	0	96	43	8	12	35	1.73
320283--320393	56	2.0	56	92	0	186	18	20	33	27	1.96
320898--321006	40	2.7	40	85	0	146	43	21	14	21	1.88
323861--323897	19	1.9	19	88	0	56	29	18	10	40	1.85
330934--330987	21	2.6	21	78	0	63	33	27	16	22	1.95
331627--331809	51	3.5	52	87	5	253	36	20	13	30	1.91
333023--333066	19	2.3	19	84	7	54	63	0	6	29	1.20
335197--335254	19	3.1	19	82	5	82	25	24	18	31	1.98
340526--340568	19	2.3	19	100	0	86	13	13	32	39	1.85
340769--340812	22	2.0	22	100	0	88	36	36	9	18	1.82
354724--354789	31	2.1	31	88	0	96	16	10	33	39	1.83
360932--361043	47	2.4	47	79	11	122	21	5	16	56	1.60
361165--361232	31	2.2	31	84	7	86	25	14	16	44	1.85
361512--361694	60	3.0	59	77	10	190	47	5	3	43	1.44
361609--361709	32	3.3	32	77	12	104	48	3	5	41	1.46
361984--362066	24	3.5	24	80	6	105	12	22	13	51	1.73
362047--362172	40	3.1	41	86	3	175	21	23	8	46	1.79
362337--362375	20	2.0	20	84	0	51	46	5	5	43	1.48
381678--381719	21	2.0	21	81	9	50	33	19	28	19	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393326--393364	15	2.6	15	95	0	69	48	20	7	23	1.75
402170--402215	14	3.6	14	77	22	64	60	0	6	32	1.22
402133--402231	24	4.0	24	73	12	85	54	4	5	36	1.41
407597--407651	20	2.7	20	88	8	76	38	3	0	58	1.16
408078--408121	23	1.9	23	85	0	61	45	2	9	43	1.48
408779--408883	55	1.9	55	82	7	133	20	20	28	31	1.97
413369--413393	13	1.9	13	100	0	50	72	0	0	28	0.86
423055--423255	37	5.4	37	85	0	249	31	31	22	13	1.93
423055--423279	74	3.0	74	82	0	252	32	32	21	14	1.93
423058--423267	111	1.9	111	85	0	294	31	31	22	14	1.94
423058--423298	111	2.2	111	81	3	279	31	31	22	14	1.94

Tables:   1   2

The End!