genome.fa.s3152.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NTFQ01003152.1 Kokia drynarioides strain JFW-HI SEQ_115738, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66443

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2138--2213	38	2.0	38	100	0	152	36	7	18	36	1.80
6618--6672	21	2.6	22	77	5	60	29	16	23	30	1.96
8935--9080	42	3.5	42	88	0	220	41	9	24	24	1.85
17588--17622	18	1.9	18	88	0	52	42	0	40	17	1.49
17591--17637	25	1.9	25	86	4	69	44	0	36	19	1.51
17807--17854	14	3.5	13	75	13	51	27	0	29	43	1.55
22800--22829	3	10.0	3	100	0	60	66	0	33	0	0.92
33292--33345	13	4.4	12	75	25	51	66	5	1	25	1.23
33293--33341	25	1.9	27	88	12	77	67	6	2	24	1.24
33932--34044	51	2.2	51	88	1	163	46	11	7	35	1.67
45273--45609	53	6.4	53	91	1	550	27	15	20	36	1.93
51899--51934	19	2.0	18	89	10	56	22	13	5	58	1.56
52166--52212	18	2.6	18	80	10	51	23	2	6	68	1.24
52173--52230	24	2.5	24	77	8	66	24	3	6	65	1.33
62338--62396	30	1.9	31	83	10	77	42	1	1	54	1.20
62365--62413	19	2.9	15	80	19	53	42	0	2	55	1.11
62360--62404	19	2.5	18	78	7	56	42	0	0	57	0.98
62487--62547	25	2.4	25	83	5	79	54	1	0	44	1.10
62920--62962	21	2.0	21	100	0	86	32	0	39	27	1.57
64780--64838	28	2.1	28	81	9	66	27	10	32	30	1.89
64847--65278	59	7.4	58	88	5	606	34	1	29	34	1.68
64863--65276	29	14.2	29	79	6	374	33	1	28	35	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66317--66380	3	21.0	3	85	9	85	34	1	1	62	1.14

Tables:   1

The End!